Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.4e-162 576.2 288 100.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 7.6e-97 357.8 245 76.7
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.0e-85 320.9 245 69.4
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.0e-85 319.3 256 68.0
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.3e-83 313.9 257 65.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.8e-83 312.0 257 66.5
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 6.3e-83 311.6 257 65.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.3e-83 311.6 255 66.3
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.8e-82 310.1 256 65.2
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 9.0e-82 307.8 257 65.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.6e-81 306.2 254 64.6
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.6e-81 306.2 257 64.6
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 5.9e-81 305.1 245 68.6
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 5.9e-81 305.1 255 65.9
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.2e-80 303.1 255 65.1
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.9e-80 302.8 257 65.0
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 5.0e-80 302.0 257 65.0
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.1e-79 300.8 243 67.5
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.5e-79 299.7 256 63.7
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 7.2e-79 298.1 257 63.0
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.2e-78 297.4 249 66.7
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 2.1e-78 296.6 257 63.4
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 2.7e-78 296.2 259 63.3
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.6e-78 295.4 258 63.6
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.6e-78 295.4 258 63.6
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 7.9e-78 294.7 243 64.6
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.0e-77 294.3 258 63.2
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.3e-77 293.9 257 63.4
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.8e-77 293.5 257 62.3
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 3.0e-77 292.7 256 64.1
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.0e-77 292.7 257 63.4
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 6.7e-77 291.6 257 64.2
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 6.7e-77 291.6 253 64.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 8.7e-77 291.2 252 62.7
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 8.7e-77 291.2 249 65.1
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.5e-76 290.4 255 63.1
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.5e-76 289.7 267 60.7
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.5e-76 289.7 249 65.1
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.3e-76 289.3 257 61.5
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 5.7e-76 288.5 255 62.0
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.4e-76 288.1 256 62.9
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 7.4e-76 288.1 252 63.5
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 9.7e-76 287.7 256 62.9
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.3e-75 287.3 255 61.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.7e-75 285.8 257 63.0
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 3.7e-75 285.8 252 63.1
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.3e-75 285.0 252 62.3
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-74 284.3 252 62.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.4e-74 283.1 257 61.1
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.4e-74 283.1 256 61.3
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.1e-74 282.3 258 59.7
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 9.0e-74 281.2 254 60.2
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 2.0e-73 280.0 252 61.9
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.6e-73 279.6 241 64.7
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.4e-73 279.3 252 61.5
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 7.7e-73 278.1 250 61.2
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 7.7e-73 278.1 257 60.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.3e-72 277.3 247 62.3
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.3e-72 277.3 259 60.2
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.3e-72 277.3 249 62.7
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 5.0e-72 275.4 253 62.5
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-71 274.2 252 60.7
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.4e-71 273.9 252 61.5
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.9e-71 273.5 252 59.9
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.9e-71 273.5 252 59.9
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.9e-71 273.5 252 59.9
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 4.2e-71 272.3 264 59.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.4e-71 271.2 252 59.1
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.2e-70 270.8 264 59.8
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.6e-70 270.4 264 59.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 1.6e-70 270.4 264 59.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.1e-70 270.0 264 59.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.1e-70 270.0 257 60.3
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 3.6e-70 269.2 253 61.7
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 7.9e-70 268.1 247 60.7
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.4e-69 267.3 255 60.4
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 6.7e-69 265.0 221 64.7
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 6.7e-69 265.0 255 59.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 6.7e-69 265.0 223 64.1
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.1e-68 264.2 229 63.8
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.5e-68 263.8 223 63.7
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 7.4e-68 261.5 254 58.7
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 4.8e-67 258.8 255 57.6
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.3e-67 258.5 253 59.3
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 8.2e-67 258.1 255 58.4
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.1e-66 257.7 255 58.4
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.8e-66 256.9 226 61.1
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.8e-66 256.9 247 59.1
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.1e-66 256.1 250 58.4
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 3.1e-66 256.1 250 58.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.1e-66 256.1 226 60.6
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 4.1e-66 255.8 255 56.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 6.9e-66 255.0 255 56.1
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 6.9e-66 255.0 255 56.1
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.5e-65 253.8 264 56.1
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.0e-65 253.4 256 57.8
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 2.0e-65 253.4 227 60.8
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-64 250.8 255 57.3
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-64 250.4 255 55.3
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-63 247.7 230 60.4
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.4e-63 247.3 259 55.6
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 9.4e-63 244.6 209 63.2
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.7e-62 243.0 206 65.0
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.0e-61 239.6 249 55.4
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.2e-61 238.8 257 55.3
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 5.2e-61 238.8 228 58.8
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 5.2e-61 238.8 246 54.5
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.6e-60 236.5 255 56.1
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.4e-60 235.7 245 54.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 5.7e-60 235.3 202 63.9
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 5.7e-60 235.3 202 63.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 5.7e-60 235.3 241 54.8
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.2e-59 233.4 202 63.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 6.3e-59 231.9 233 57.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.0e-57 226.9 199 63.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 5.9e-57 225.3 204 60.8
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 5.9e-57 225.3 172 70.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 2.9e-56 223.0 170 70.6
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.9e-55 220.3 170 70.0
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 4.2e-55 219.2 255 51.0
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 7.2e-55 218.4 170 68.2
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.2e-54 217.6 170 68.2
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-53 214.5 171 67.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 9.7e-52 208.0 177 66.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-49 201.1 254 49.2
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.0e-48 198.0 177 58.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.7e-48 197.2 199 54.8
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.0e-48 195.7 255 48.6
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.0e-48 195.7 208 54.8
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 1.2e-46 191.0 228 49.6
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.0e-45 188.0 274 41.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 5.2e-45 185.7 251 44.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.6e-44 183.3 188 52.7
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.6e-44 183.3 193 53.9
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 4.4e-44 182.6 259 43.2
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.7e-44 182.2 172 58.1
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 9.8e-44 181.4 224 46.9
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-43 180.6 97 89.7
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.2e-43 180.3 107 79.4
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 8.3e-43 178.3 218 50.0
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.4e-42 175.6 96 85.4
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 6.5e-40 168.7 187 52.4
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 2.5e-39 166.8 95 78.9
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.0e-29 132.9 150 50.7
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 3.7e-27 126.3 196 39.8
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-26 124.8 62 93.5
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.8e-25 118.6 82 74.4
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.3e-24 117.1 141 50.4
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.6e-22 109.8 58 94.8
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.6e-20 103.6 106 54.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.9e-18 97.4 67 76.1
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.6e-14 84.3 111 45.0
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.5e-12 77.8 96 50.0
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.9e-08 63.2 35 88.6
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 5.1e-08 62.8 145 35.9
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.6e-07 59.3 37 75.7
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 9.5e-07 58.5 35 82.9


User provided reference genes

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