Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039980.1 Olea europaea HOM05D001194 ORTHO05D005909 1.0e-102 376.7 188 100.0
MSTRG.22605 Avicennia marina HOM05D001194 ORTHO05D005909 3.9e-86 321.6 186 86.0
Ciclev10025274m.g Citrus clementina HOM05D001194 ORTHO05D005909 7.7e-82 307.4 187 82.9
CAN.G410.38 Capsicum annuum HOM05D001194 ORTHO05D005909 3.8e-81 305.1 186 80.1
Lj5A49T38 Lonicera japonica HOM05D001194 ORTHO05D005909 3.8e-81 305.1 187 80.7
Nitab4.5_0000316g0210 Nicotiana tabacum HOM05D001194 ORTHO05D005909 1.5e-80 303.1 186 80.6
Nitab4.5_0001543g0050 Nicotiana tabacum HOM05D001194 ORTHO05D005909 1.5e-80 303.1 186 80.6
Manes.04G137500 Manihot esculenta HOM05D001194 ORTHO05D005909 4.2e-80 301.6 186 81.2
CiPaw.01G227200 Carya illinoinensis HOM05D001194 ORTHO05D005909 7.2e-80 300.8 187 79.7
Prupe.3G052600 Prunus persica HOM05D001194 ORTHO05D005909 9.4e-80 300.4 187 80.2
Peaxi162Scf00087g00133 Petunia axillaris HOM05D001194 ORTHO05D005909 2.1e-79 299.3 186 79.6
MELO3C013031.2 Cucumis melo HOM05D001194 ORTHO05D005909 6.1e-79 297.7 187 78.6
CsaV3_3G044050 Cucumis sativus L. HOM05D001194 ORTHO05D005909 6.1e-79 297.7 187 78.6
MD09G1196200 Malus domestica HOM05D001194 ORTHO05D005909 1.0e-78 297.0 187 78.1
SGA_v2.0_scaffold71G23749 Striga asiatica HOM05D001194 ORTHO05D005909 1.4e-78 296.6 182 81.9
CSS0021774 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 1.8e-78 296.2 187 80.7
CSS0002183 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 5.2e-78 294.7 187 80.2
CSS0036616 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 5.2e-78 294.7 187 80.2
CANSAT56G1148 Cannabis sativa HOM05D001194 ORTHO05D005909 5.2e-78 294.7 187 78.1
CiPaw.02G142100 Carya illinoinensis HOM05D001194 ORTHO05D005909 1.2e-77 293.5 187 79.1
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 1.5e-77 293.1 187 78.6
Potri.001G199600 Populus trichocarpa HOM05D001194 ORTHO05D005909 1.5e-77 293.1 187 78.1
TWI79G1226 Tripterygium wilfordii HOM05D001194 ORTHO05D005909 2.0e-77 292.7 187 78.6
ClCG07G013590 Citrullus lanatus HOM05D001194 ORTHO05D005909 3.3e-77 292.0 187 77.5
Eucgr.J02887 Eucalyptus grandis HOM05D001194 ORTHO05D005909 3.3e-77 292.0 187 77.5
Sabra01G0156300 Salix brachista HOM05D001194 ORTHO05D005909 5.7e-77 291.2 187 78.1
MD17G1176900 Malus domestica HOM05D001194 ORTHO05D005909 9.7e-77 290.4 187 77.0
QL05p015826 Quercus lobata HOM05D001194 ORTHO05D005909 9.7e-77 290.4 186 78.0
Sed0016739 Sechium edule HOM05D001194 ORTHO05D005909 2.8e-76 288.9 187 75.9
Atru.chr1.3635 Acer truncatum HOM05D001194 ORTHO05D005909 3.7e-76 288.5 187 79.7
Carub.0001s4059 Capsella rubella HOM05D001194 ORTHO05D005909 8.2e-76 287.3 187 77.0
Nn8g38927 Nelumbo nucifera HOM05D001194 ORTHO05D005909 8.2e-76 287.3 189 77.8
Thhalv10011312m.g Eutrema salsugineum HOM05D001194 ORTHO05D005909 1.1e-75 287.0 187 77.0
TAR626G1853 Trochodendron aralioides HOM05D001194 ORTHO05D005909 1.1e-75 287.0 178 80.9
arahy.Tifrunner.gnm1.ann1.U81MKX Arachis hypogaea HOM05D001194 ORTHO05D005909 1.4e-75 286.6 185 77.8
Ca_23295_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 1.8e-75 286.2 187 75.9
CARHR041880 Cardamine hirsuta HOM05D001194 ORTHO05D005909 2.4e-75 285.8 187 76.5
Gohir.A10G062100 Gossypium hirsutum HOM05D001194 ORTHO05D005909 2.4e-75 285.8 187 78.6
Gohir.D10G063800 Gossypium hirsutum HOM05D001194 ORTHO05D005909 2.4e-75 285.8 187 78.6
Gorai.011G067700 Gossypium raimondii HOM05D001194 ORTHO05D005909 2.4e-75 285.8 187 78.6
Thecc.06G107800 Theobroma cacao HOM05D001194 ORTHO05D005909 2.4e-75 285.8 188 79.8
AL1G59660 Arabidopsis lyrata HOM05D001194 ORTHO05D005909 3.1e-75 285.4 187 76.5
arahy.Tifrunner.gnm1.ann1.2JHZ20 Arachis hypogaea HOM05D001194 ORTHO05D005909 3.1e-75 285.4 185 77.3
FAN09G1927 Fragaria x ananassa HOM05D001194 ORTHO05D005909 3.1e-75 285.4 187 76.5
Dinv30399 Davidia involucrata HOM05D001194 ORTHO05D005909 4.1e-75 285.0 187 77.0
FvH4_6g32960 Fragaria vesca HOM05D001194 ORTHO05D005909 4.1e-75 285.0 187 76.5
Glyma.07G012500 Glycine max HOM05D001194 ORTHO05D005909 4.1e-75 285.0 187 75.9
Glyma.08G196200 Glycine max HOM05D001194 ORTHO05D005909 4.1e-75 285.0 187 75.4
THA.LOC104805919 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 5.3e-75 284.6 187 77.0
Aa31LG10G3090 Aethionema arabicum HOM05D001194 ORTHO05D005909 9.1e-75 283.9 183 76.5
Duzib235G0439 Durio zibethinus HOM05D001194 ORTHO05D005909 9.1e-75 283.9 187 78.6
FAN02G4259 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.2e-74 283.5 187 75.9
FAN05G2672 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.2e-74 283.5 187 75.9
AT1G51720 Arabidopsis thaliana HOM05D001194 ORTHO05D005909 1.6e-74 283.1 187 75.9
RcHm_v2.0_Chr2g0142511 Rosa chinensis HOM05D001194 ORTHO05D005909 2.0e-74 282.7 187 76.5
Sc12g0009870 Simmondsia chinensis HOM05D001194 ORTHO05D005909 2.0e-74 282.7 188 76.1
Sp1g38360 Schrenkiella parvula HOM05D001194 ORTHO05D005909 2.7e-74 282.3 187 75.4
HanXRQChr09g0276311 Helianthus annuus HOM05D001194 ORTHO05D005909 3.5e-74 282.0 187 76.5
Cfa003606 Carpinus fangiana HOM05D001194 ORTHO05D005909 4.5e-74 281.6 187 78.1
Haze_15919 Corylus avellana HOM05D001194 ORTHO05D005909 4.5e-74 281.6 187 78.1
FAN14G3358 Fragaria x ananassa HOM05D001194 ORTHO05D005909 4.5e-74 281.6 187 75.9
Medtr8g015600 Medicago truncatula HOM05D001194 ORTHO05D005909 4.5e-74 281.6 187 74.9
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 7.7e-74 280.8 178 79.2
ECA232G0548 Erigeron canadensis HOM05D001194 ORTHO05D005909 2.9e-73 278.9 186 74.7
Lalb_Chr04g0263101 Lupinus albus HOM05D001194 ORTHO05D005909 2.9e-73 278.9 187 74.9
Rhsim08G0231400 Rhododendron simsii HOM05D001194 ORTHO05D005909 2.9e-73 278.9 187 77.0
vmacro18821 Vaccinium macrocarpon HOM05D001194 ORTHO05D005909 3.8e-73 278.5 188 77.1
Sed0012613 Sechium edule HOM05D001194 ORTHO05D005909 8.5e-73 277.3 187 74.9
VMungo0331G0238 Vigna mungo HOM05D001194 ORTHO05D005909 8.5e-73 277.3 188 74.5
Phvul.010G142000 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 1.1e-72 276.9 188 75.5
VMungo0331G0168 Vigna mungo HOM05D001194 ORTHO05D005909 1.1e-72 276.9 188 75.5
Cc04_g02210 Coffea canephora HOM05D001194 ORTHO05D005909 1.5e-72 276.6 173 79.8
Psat4g194400 Pisum sativum HOM05D001194 ORTHO05D005909 1.5e-72 276.6 187 74.3
unitig_748.g7452 Utricularia gibba HOM05D001194 ORTHO05D005909 5.5e-72 274.6 184 75.5
Hund00742 Selenicereus undatus HOM05D001194 ORTHO05D005909 7.2e-72 274.2 186 74.7
BcaB07g33628 Brassica carinata HOM05D001194 ORTHO05D005909 1.2e-71 273.5 188 75.0
TPR.G8761 Trifolium pratense HOM05D001194 ORTHO05D005909 1.2e-71 273.5 187 73.8
COL.COLO4_30608 Corchorus olitorius HOM05D001194 ORTHO05D005909 2.7e-71 272.3 188 77.1
Duzib160G0082 Durio zibethinus HOM05D001194 ORTHO05D005909 2.7e-71 272.3 187 75.9
Phvul.010G141900 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 3.6e-71 271.9 189 74.6
AUR62038337 Chenopodium quinoa HOM05D001194 ORTHO05D005909 4.7e-71 271.6 189 75.1
Dinv37933 Davidia involucrata HOM05D001194 ORTHO05D005909 1.8e-70 269.6 168 81.0
EL10Ac9g21120 Beta vulgaris HOM05D001194 ORTHO05D005909 1.5e-69 266.5 189 74.1
BraA08t32294Z Brassica rapa HOM05D001194 ORTHO05D005909 1.5e-69 266.5 183 74.3
AUR62023909 Chenopodium quinoa HOM05D001194 ORTHO05D005909 1.5e-69 266.5 189 74.1
BraA06t23435Z Brassica rapa HOM05D001194 ORTHO05D005909 4.4e-69 265.0 188 73.9
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 4.4e-69 265.0 186 69.4
Solyc01g068210.3 Solanum lycopersicum HOM05D001194 ORTHO05D005909 5.7e-69 264.6 186 71.5
C03p90270 Brassica napus HOM05D001194 ORTHO05D005909 7.5e-69 264.2 183 74.3
BolC3t21349H Brassica oleracea HOM05D001194 ORTHO05D005909 7.5e-69 264.2 183 74.3
C06p06880 Brassica napus HOM05D001194 ORTHO05D005909 1.7e-68 263.1 188 73.4
BolC6t35794H Brassica oleracea HOM05D001194 ORTHO05D005909 1.7e-68 263.1 188 73.4
Lsat_1_v5_gn_4_96000 Lactuca sativa HOM05D001194 ORTHO05D005909 2.2e-68 262.7 178 74.2
A08p02540 Brassica napus HOM05D001194 ORTHO05D005909 2.8e-68 262.3 183 73.2
DCAR_031424 Daucus carota HOM05D001194 ORTHO05D005909 3.7e-68 261.9 182 74.2
A06p02290 Brassica napus HOM05D001194 ORTHO05D005909 8.3e-68 260.8 188 73.4
Ah.01g004470 Amaranthus hybridus HOM05D001194 ORTHO05D005909 1.8e-67 259.6 180 76.1
Lj3g0000235 Lotus japonicus HOM05D001194 ORTHO05D005909 3.1e-67 258.8 178 71.3
BcaC08g43332 Brassica carinata HOM05D001194 ORTHO05D005909 2.7e-66 255.8 188 71.8
ATR0789G185 Amborella trichopoda HOM05D001194 ORTHO05D005909 1.0e-65 253.8 188 68.6
Migut.D00978 Erythranthe guttata HOM05D001194 ORTHO05D005909 8.6e-65 250.8 184 72.8
Aqoxy7G01307 Aquilegia oxysepala HOM05D001194 ORTHO05D005909 3.2e-64 248.8 182 72.0
Sopen01g030150 Solanum pennellii HOM05D001194 ORTHO05D005909 4.2e-64 248.4 186 68.3
HPP92_023231 Vanilla planifolia HOM05D001194 ORTHO05D005909 8.8e-62 240.7 192 66.1
PSO063G4370 Papaver somniferum HOM05D001194 ORTHO05D005909 1.2e-61 240.4 179 69.8
PSO832G2057 Papaver somniferum HOM05D001194 ORTHO05D005909 5.7e-61 238.0 179 69.3
Hma1.2p1_0132F.1_g060700 Hydrangea macrophylla HOM05D001194 ORTHO05D005909 1.2e-58 230.3 185 66.5
PGR102G0345 Punica granatum HOM05D001194 ORTHO05D005909 1.6e-58 229.9 188 66.0
PGSC0003DMG402006819 Solanum tuberosum HOM05D001194 ORTHO05D005909 2.0e-58 229.6 173 67.6
CDE05G3462 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 4.5e-58 228.4 180 63.9
Nn6g35406 Nelumbo nucifera HOM05D001194 ORTHO05D005909 2.3e-57 226.1 189 65.1
CDE05G0449 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 7.3e-56 221.1 183 62.8
MBI04_g06219_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D005909 6.1e-55 218.0 181 64.1
Actinidia32132 Actinidia chinensis HOM05D001194 ORTHO05D005909 9.8e-53 210.7 187 60.4
SEGI_11676 Sequoiadendron giganteum HOM05D001194 ORTHO05D005909 6.4e-52 208.0 194 59.3
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.6e-50 203.4 165 69.7
Actinidia21741 Actinidia chinensis HOM05D001194 ORTHO05D005909 5.9e-50 201.4 113 85.8
TAR383G0515 Trochodendron aralioides HOM05D001194 ORTHO05D005909 1.1e-48 197.2 113 85.0
Zm00001eb162300 Zea mays HOM05D001194 ORTHO05D005909 2.8e-47 192.6 201 54.7
Os01g0558200 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D005909 2.6e-45 186.0 192 55.7
Mapoly0010s0062 Marchantia polymorpha HOM05D001194 ORTHO05D005909 1.9e-43 179.9 184 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2881 Anthoceros agrestis HOM05D001194 ORTHO05D005909 2.7e-42 176.0 184 52.7
SMO119G0344 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.1e-38 164.1 164 58.5
Pp3c14_22460 Physcomitrium patens HOM05D001194 ORTHO05D005909 6.8e-38 161.4 96 77.1
SMO163G0008 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.2e-37 160.6 150 60.0
Pp3c2_4200 Physcomitrium patens HOM05D001194 ORTHO05D005909 1.5e-37 160.2 96 78.1
Pp3c1_36440 Physcomitrium patens HOM05D001194 ORTHO05D005909 2.2e-36 156.4 154 56.5
SMO347G0060 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 8.3e-36 154.5 94 74.5
Medtr1g021885 Medicago truncatula HOM05D001194 ORTHO05D005909 3.0e-33 146.0 186 46.8
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 5.2e-22 108.6 189 42.9
BcaC01g01291 Brassica carinata HOM05D001194 ORTHO05D005909 5.4e-11 72.0 70 57.1
BcaC01g01292 Brassica carinata HOM05D001194 ORTHO05D005909 7.1e-11 71.6 38 92.1
Ca_23297_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 8.7e-09 64.7 71 50.7
SEGI_25027 Sequoiadendron giganteum HOM05D001194 ORTHO05D050892 1.5e-08 63.9 138 29.0


User provided reference genes

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