Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 2.1e-85 318.9 158 100.0
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 5.1e-71 271.2 152 85.5
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.7e-70 266.9 151 84.8
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 2.8e-69 265.4 153 82.4
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 8.2e-69 263.8 153 82.4
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.1e-68 263.5 152 82.9
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.5e-67 259.6 152 80.9
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.4e-67 258.5 153 79.1
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.3e-66 256.5 144 84.7
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 2.9e-66 255.4 154 78.6
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 6.5e-66 254.2 149 81.2
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.1e-65 253.4 151 78.8
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.1e-65 253.4 155 77.4
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 5.5e-65 251.1 143 84.6
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 9.4e-65 250.4 143 83.2
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.2e-64 250.0 149 79.2
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.6e-64 249.6 153 76.5
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.6e-64 249.6 152 78.9
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 2.1e-64 249.2 151 77.5
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.7e-64 248.8 151 78.1
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 3.6e-64 248.4 151 76.8
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 3.6e-64 248.4 143 83.2
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 7.9e-64 247.3 151 76.2
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 7.9e-64 247.3 151 76.8
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 7.9e-64 247.3 151 76.8
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.0e-63 246.9 152 77.6
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.0e-63 246.9 172 72.1
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.4e-63 246.5 151 76.2
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.4e-63 246.5 150 78.0
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.8e-63 246.1 137 86.1
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.8e-63 246.1 151 76.2
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 2.3e-63 245.7 153 75.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 3.0e-63 245.4 149 79.2
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.9e-63 245.0 138 84.1
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 3.9e-63 245.0 159 73.6
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 1.1e-62 243.4 150 75.3
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.6e-62 242.3 142 79.6
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 3.3e-62 241.9 153 75.8
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.4e-62 241.5 155 78.7
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 5.7e-62 241.1 145 79.3
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 5.7e-62 241.1 153 75.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.4e-62 240.7 153 74.5
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.7e-61 239.6 142 78.2
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.7e-61 239.6 142 78.2
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.7e-61 239.6 142 81.7
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.8e-61 238.8 141 80.1
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.8e-61 238.8 153 74.5
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 3.7e-61 238.4 160 73.1
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 3.7e-61 238.4 169 69.2
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 3.7e-61 238.4 153 73.2
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 4.8e-61 238.0 146 75.3
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 4.8e-61 238.0 142 78.2
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 6.3e-61 237.7 153 73.2
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 6.3e-61 237.7 153 73.2
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 8.2e-61 237.3 142 78.2
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.1e-60 236.9 144 79.9
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.4e-60 236.5 144 77.1
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.4e-60 235.7 146 75.3
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 2.4e-60 235.7 146 75.3
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 2.4e-60 235.7 146 75.3
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.4e-60 235.7 153 71.9
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 3.1e-60 235.3 153 72.5
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 5.3e-60 234.6 142 78.2
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 7.0e-60 234.2 142 78.2
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 9.1e-60 233.8 149 72.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.2e-59 233.4 153 70.6
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.2e-59 233.4 153 71.2
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.6e-59 233.0 153 71.2
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.0e-59 232.6 153 69.9
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.0e-59 232.6 153 70.6
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.6e-59 232.3 153 69.9
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.5e-59 231.9 157 69.4
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.5e-59 231.9 153 69.9
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.5e-59 231.9 158 69.6
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.5e-59 231.5 187 63.6
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.9e-59 231.1 153 69.9
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 5.9e-59 231.1 153 69.9
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 7.7e-59 230.7 153 69.9
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.0e-58 230.3 144 77.1
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.3e-58 229.9 153 69.3
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 1.7e-58 229.6 158 69.0
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 2.2e-58 229.2 153 69.3
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.9e-58 228.8 153 69.3
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.8e-58 228.4 146 74.0
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 3.8e-58 228.4 153 68.6
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 8.5e-58 227.3 156 75.0
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.5e-57 226.5 157 66.9
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.5e-57 226.5 138 75.4
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.9e-57 226.1 157 67.5
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 3.2e-57 225.3 153 68.0
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 3.2e-57 225.3 153 68.0
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 7.2e-57 224.2 144 75.7
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 9.4e-57 223.8 144 72.9
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 3.6e-56 221.9 143 74.1
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.0e-56 220.7 155 66.5
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.0e-55 220.3 145 71.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 8.8e-55 217.2 155 65.2
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.0e-54 216.1 188 58.5
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 3.3e-54 215.3 120 84.2
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 7.5e-54 214.2 152 68.4
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.8e-53 212.2 133 74.4
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 1.1e-52 210.3 117 85.5
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 5.9e-51 204.5 128 74.2
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.3e-47 192.6 143 65.0
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 6.8e-47 191.0 153 62.1
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.4e-44 182.6 141 66.7
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.6e-43 179.9 137 59.9
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 2.0e-43 179.5 137 61.3
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 7.7e-43 177.6 142 58.5
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 4.2e-41 171.8 149 62.4
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 7.2e-41 171.0 116 68.1
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 4.7e-40 168.3 136 54.4
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 4.0e-39 165.2 134 56.0
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 5.2e-39 164.9 113 67.3
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.1e-36 157.1 111 66.7
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.3e-34 149.4 82 84.1
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.9e-33 146.4 88 83.0
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.6e-32 142.1 87 78.2
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.0e-31 138.7 86 69.8
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 9.8e-30 134.0 99 64.6
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 2.3e-26 122.9 68 79.4
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.2e-24 117.1 64 79.7
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 5.4e-20 101.7 49 87.8
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 1.6e-19 100.1 72 68.1
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 3.9e-18 95.5 138 37.7
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.5e-17 93.6 54 81.5
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.6e-16 90.1 96 51.0
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 5.2e-15 85.1 46 78.3
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.1e-11 73.2 35 85.7
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 2.7e-11 72.8 128 39.1
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 8.6e-10 67.8 35 88.6
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 9.5e-09 64.3 128 30.5


User provided reference genes

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