Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 7.7e-222 773.5 381 100.0
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.3e-194 682.2 379 86.5
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.9e-135 486.5 381 64.8
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 3.0e-133 479.2 378 65.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 8.4e-128 461.1 380 62.9
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.6e-126 455.3 378 62.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.3e-125 453.8 378 61.4
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.8e-125 453.4 381 61.4
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.1e-124 450.7 379 62.0
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.5e-124 449.5 381 62.2
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.3e-123 447.2 381 61.9
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 3.7e-123 445.7 381 61.7
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.0e-121 439.9 381 60.9
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.3e-120 437.2 382 59.9
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.7e-118 429.5 381 58.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 3.6e-118 429.1 378 58.7
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 4.6e-118 428.7 382 58.9
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 6.1e-118 428.3 381 58.0
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.5e-116 423.7 378 58.7
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.3e-116 422.2 348 61.5
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 7.4e-116 421.4 385 57.4
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 7.4e-116 421.4 350 61.7
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.1e-114 417.5 378 57.4
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.4e-114 417.2 382 57.6
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 5.3e-114 415.2 381 55.9
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.9e-114 414.8 381 58.0
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.2e-113 414.1 380 56.8
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.5e-113 413.7 381 56.4
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.6e-113 412.9 379 56.7
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 3.4e-113 412.5 383 55.6
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 3.4e-113 412.5 378 56.3
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 4.5e-113 412.1 383 55.6
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.0e-112 411.0 380 56.1
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.9e-112 409.5 378 56.3
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.8e-112 409.1 383 55.1
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 8.5e-112 407.9 378 56.9
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.1e-111 407.5 383 55.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.4e-111 407.1 381 55.9
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-111 407.1 375 57.6
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 4.2e-111 405.6 382 53.4
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 7.2e-111 404.8 381 55.4
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.1e-110 403.3 380 55.0
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 6.1e-110 401.7 383 56.9
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 6.1e-110 401.7 383 54.6
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 7.9e-110 401.4 380 54.2
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 3.0e-109 399.4 380 53.7
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.5e-108 397.1 380 53.9
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.3e-108 396.0 379 54.4
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 7.4e-108 394.8 380 55.3
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 2.8e-107 392.9 389 53.2
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.7e-107 392.5 378 53.4
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 8.2e-107 391.3 378 52.1
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 3.1e-106 389.4 384 53.4
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 9.1e-106 387.9 381 52.0
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 9.1e-106 387.9 378 52.6
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.0e-105 386.7 378 52.1
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.6e-105 386.3 380 54.2
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.6e-105 386.3 383 54.6
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.6e-105 386.3 379 52.8
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.6e-105 386.3 380 52.9
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.9e-105 385.2 389 53.2
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.3e-104 384.0 381 52.5
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 5.0e-104 382.1 382 53.7
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 6.5e-104 381.7 378 54.0
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 6.5e-104 381.7 370 53.8
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 8.5e-104 381.3 384 52.1
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-103 380.6 384 51.8
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 4.2e-103 379.0 380 52.9
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.4e-103 377.9 380 52.6
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.4e-103 377.9 380 52.6
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.1e-102 376.7 384 51.6
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.7e-102 376.3 381 52.8
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.6e-102 375.9 380 52.6
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.6e-102 375.9 380 52.6
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 3.6e-102 375.9 379 53.3
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 6.1e-102 375.2 380 54.7
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.0e-101 374.4 384 51.8
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.4e-101 374.0 382 52.6
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 1.8e-101 373.6 382 52.4
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.8e-101 373.6 378 52.1
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.8e-101 373.6 387 51.4
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 6.7e-101 371.7 384 52.1
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 8.8e-101 371.3 381 51.4
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 8.8e-101 371.3 361 54.8
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.1e-100 370.9 384 51.6
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.5e-100 370.5 384 51.8
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.5e-100 370.5 383 51.7
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.5e-100 370.5 379 52.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.4e-100 369.0 379 52.2
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.3e-99 367.5 383 51.2
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.2e-99 366.7 383 51.7
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.1e-98 364.4 384 50.0
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.1e-98 364.4 384 50.0
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.8e-98 363.6 384 50.0
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.4e-98 363.2 360 52.5
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 3.1e-98 362.8 384 49.7
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.2e-97 360.9 379 49.1
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.2e-96 356.7 379 49.3
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.5e-95 353.2 377 52.5
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 4.0e-93 345.9 369 49.3
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 5.2e-93 345.5 388 49.5
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.8e-91 339.0 382 46.6
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.3e-90 335.5 369 46.9
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 4.0e-85 319.3 383 47.0
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 4.8e-83 312.4 373 45.0
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 8.3e-83 311.6 381 44.9
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 4.1e-82 309.3 383 45.2
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 9.1e-82 308.1 359 45.7
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.0e-81 307.0 357 47.9
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.5e-79 300.8 457 38.9
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 2.5e-79 300.1 295 51.2
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 9.8e-76 288.1 360 45.0
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 1.7e-75 287.3 379 40.9
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.5e-71 274.2 302 46.0
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.2e-68 264.6 377 39.5
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 6.4e-67 258.8 231 61.0
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.8e-62 243.4 378 37.8
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.4e-61 241.1 377 37.7
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 9.2e-58 228.4 187 61.0
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 3.1e-53 213.4 203 49.3
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.3e-51 208.0 198 52.0
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.4e-50 203.8 251 42.2
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.2e-44 184.9 245 40.0
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.1e-38 164.1 184 53.8
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.4e-37 161.4 164 47.6
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.4e-36 156.8 128 54.7
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.4e-36 156.8 128 54.7
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.9e-35 153.7 289 31.1
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.9e-32 143.3 132 50.8
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.5e-31 141.4 145 46.9
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.5e-23 114.8 88 54.5
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.5e-23 114.0 88 54.5
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.3e-23 113.6 88 54.5
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 2.1e-22 110.9 285 28.4
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-21 108.2 88 53.4
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 3.1e-21 107.1 113 46.9
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.9e-21 105.9 93 51.6
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 9.0e-21 105.5 101 53.5
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.1e-13 82.0 227 30.8
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 4.1e-13 80.1 65 50.8
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 2.0e-12 77.8 45 86.7
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.9e-10 71.2 58 58.6
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.9e-10 71.2 66 60.6
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.5e-10 70.9 64 57.8
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.2e-10 70.5 64 57.8
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.1e-09 66.2 59 57.6
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 8.7e-08 62.4 47 63.8
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 8.7e-08 62.4 47 63.8
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 6.3e-06 56.2 101 36.6


User provided reference genes

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