Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 1.4e-24 115.5 61 100.0
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 1.5e-18 95.5 53 92.5
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 3.3e-18 94.4 54 90.7
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 5.7e-18 93.6 54 88.9
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 5.7e-18 93.6 54 88.9
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 7.4e-18 93.2 54 88.9
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 7.4e-18 93.2 54 88.9
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 7.4e-18 93.2 55 87.3
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 7.4e-18 93.2 54 88.9
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 9.7e-18 92.8 54 88.9
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 1.3e-17 92.4 54 87.0
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 1.6e-17 92.0 54 88.9
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 1.6e-17 92.0 54 88.9
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 1.6e-17 92.0 54 87.0
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.2e-17 91.7 54 87.0
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 2.2e-17 91.7 54 87.0
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.2e-17 91.7 55 83.6
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 2.2e-17 91.7 54 87.0
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 2.2e-17 91.7 54 87.0
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 2.8e-17 91.3 55 81.8
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.8e-17 91.3 55 83.6
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 3.7e-17 90.9 54 85.2
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 3.7e-17 90.9 54 85.2
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 4.8e-17 90.5 53 86.8
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 4.8e-17 90.5 60 80.0
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 4.8e-17 90.5 54 85.2
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.8e-17 90.5 54 85.2
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.8e-17 90.5 54 85.2
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 6.3e-17 90.1 54 85.2
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 8.2e-17 89.7 54 85.2
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 8.2e-17 89.7 54 85.2
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.1e-16 89.4 53 84.9
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 1.4e-16 89.0 54 83.3
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 1.8e-16 88.6 54 81.5
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 1.8e-16 88.6 55 78.2
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.8e-16 88.6 54 81.5
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 3.1e-16 87.8 54 81.5
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 3.1e-16 87.8 54 81.5
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 3.1e-16 87.8 54 81.5
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 3.1e-16 87.8 54 81.5
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 3.1e-16 87.8 54 81.5
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 3.1e-16 87.8 54 81.5
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 4.1e-16 87.4 54 81.5
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 79.6
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 79.6
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 81.5
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 79.6
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 81.5
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 81.5
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 79.6
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 79.6
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 5.3e-16 87.0 54 81.5
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 6.9e-16 86.7 55 78.2
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 6.9e-16 86.7 55 78.2
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 6.9e-16 86.7 55 78.2
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 6.9e-16 86.7 54 79.6
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 6.9e-16 86.7 55 78.2
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 9.0e-16 86.3 55 76.4
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 9.0e-16 86.3 55 76.4
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 9.0e-16 86.3 55 76.4
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 9.0e-16 86.3 55 76.4
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 9.0e-16 86.3 55 76.4
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 9.0e-16 86.3 54 79.6
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 9.0e-16 86.3 54 79.6
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 79.6
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 79.6
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 79.6
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 79.6
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 81.5
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 79.6
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 77.8
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 1.2e-15 85.9 54 79.6
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 1.5e-15 85.5 54 77.8
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 1.5e-15 85.5 54 79.6
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 1.5e-15 85.5 53 81.1
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 2.0e-15 85.1 54 77.8
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 2.6e-15 84.7 54 75.9
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 4.5e-15 84.0 54 77.8
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 5.9e-15 83.6 53 75.5
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 5.9e-15 83.6 53 75.5
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 7.7e-15 83.2 54 77.8
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.3e-14 82.4 50 84.0
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 1.3e-14 82.4 54 74.1
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 2.9e-14 81.3 54 74.1
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 6.5e-14 80.1 55 72.7
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 6.5e-14 80.1 55 72.7
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 6.5e-14 80.1 53 77.4
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 6.5e-14 80.1 53 77.4
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 8.5e-14 79.7 54 72.2
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 1.4e-13 79.0 51 80.4
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 1.4e-13 79.0 54 75.9
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 5.5e-13 77.0 59 69.5
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 9.4e-13 76.3 54 70.4
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 9.4e-13 76.3 53 69.8
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 1.2e-12 75.9 53 69.8
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.0e-11 72.8 54 66.7
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 1.0e-11 72.8 54 63.0
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 3.3e-10 67.8 54 66.7
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 7.4e-10 66.6 54 66.7
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.3e-09 65.9 55 61.8
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.7e-09 64.3 54 63.0
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.7e-09 64.3 54 63.0
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.7e-09 64.3 54 63.0
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 3.7e-09 64.3 54 64.8
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 1.1e-08 62.8 54 61.1
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 1.4e-08 62.4 54 61.1
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 3.4e-07 57.8 53 58.5
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 6.5e-06 53.5 36 77.8


User provided reference genes

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