Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.7e-112 408.7 204 100.0
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.9e-94 349.4 204 82.4
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.7e-90 336.3 205 79.0
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 2.2e-90 335.9 204 80.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.9e-90 335.5 202 80.7
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.9e-90 335.5 205 78.5
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 7.1e-89 330.9 194 81.4
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 9.2e-89 330.5 204 79.4
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.2e-88 330.1 205 77.1
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.6e-88 329.7 204 76.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 5.1e-87 324.7 206 76.7
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 5.1e-87 324.7 205 78.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.5e-86 322.4 205 76.6
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.3e-86 321.6 204 76.5
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.6e-86 321.2 204 75.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 5.6e-86 321.2 204 77.9
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.2e-85 320.1 204 77.9
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.2e-85 320.1 204 76.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.6e-85 319.7 205 76.1
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.1e-85 319.3 205 75.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.6e-85 318.5 204 74.5
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 3.6e-85 318.5 207 76.3
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 6.2e-85 317.8 205 74.1
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 6.8e-84 314.3 204 71.6
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 8.9e-84 313.9 203 71.4
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.5e-83 313.2 204 72.5
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.5e-83 313.2 204 72.5
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 2.6e-83 312.4 204 74.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.4e-83 312.0 207 73.9
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.4e-83 312.0 203 73.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 4.4e-83 311.6 207 73.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 7.6e-83 310.8 204 73.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 9.9e-83 310.5 204 71.6
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.7e-82 309.7 204 71.1
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 1.7e-82 309.7 204 74.5
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.9e-82 308.9 205 75.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 4.9e-82 308.1 204 73.5
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.9e-82 308.1 204 73.5
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 6.4e-82 307.8 204 72.1
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.1e-81 307.0 198 76.3
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.4e-81 306.6 203 72.4
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.9e-81 306.2 205 71.7
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.9e-81 306.2 201 69.7
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.2e-81 305.4 227 67.4
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.4e-81 304.7 204 72.5
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.2e-81 303.9 204 72.5
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.2e-80 303.5 207 71.5
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 2.1e-80 302.8 203 70.9
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 6.0e-80 301.2 203 70.9
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.3e-79 300.1 204 71.1
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.7e-79 299.7 205 71.2
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 3.0e-79 298.9 205 70.7
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.9e-79 298.5 205 70.7
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 3.9e-79 298.5 204 72.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 5.1e-79 298.1 199 70.9
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 6.6e-79 297.7 202 70.3
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 6.6e-79 297.7 199 71.4
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.5e-78 296.6 205 70.2
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.9e-78 296.2 204 68.1
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.6e-78 294.7 199 69.8
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 5.6e-78 294.7 205 69.3
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 9.6e-78 293.9 202 69.8
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 9.6e-78 293.9 202 70.3
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 2.1e-77 292.7 202 69.8
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 2.1e-77 292.7 202 69.8
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 3.6e-77 292.0 207 67.6
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 3.6e-77 292.0 207 67.6
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 3.6e-77 292.0 202 69.3
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 4.7e-77 291.6 202 69.8
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 4.7e-77 291.6 202 69.8
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 4.7e-77 291.6 202 69.8
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 6.2e-77 291.2 202 68.8
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 6.2e-77 291.2 202 69.8
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 6.2e-77 291.2 205 68.3
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.1e-76 290.4 202 68.8
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.4e-76 290.0 199 69.3
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.8e-76 289.7 202 69.3
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.4e-76 289.3 202 69.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.4e-76 289.3 199 69.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 3.1e-76 288.9 209 68.4
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 4.0e-76 288.5 202 68.8
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 4.0e-76 288.5 206 69.9
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 5.2e-76 288.1 202 68.3
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.2e-76 288.1 199 71.9
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 6.8e-76 287.7 202 69.3
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 6.8e-76 287.7 202 68.8
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 6.8e-76 287.7 202 68.8
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 6.8e-76 287.7 202 68.8
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 8.9e-76 287.3 205 70.2
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-75 287.0 202 67.3
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.2e-75 287.0 202 67.3
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.5e-75 286.6 199 69.8
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.0e-75 286.2 202 68.3
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 2.0e-75 286.2 199 68.8
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 4.4e-75 285.0 204 66.2
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 5.8e-75 284.6 200 69.5
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 9.9e-75 283.9 199 68.8
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.9e-74 282.3 204 65.2
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 4.9e-74 281.6 192 70.8
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 6.4e-74 281.2 256 57.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.4e-73 280.0 202 67.8
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.4e-73 280.0 204 69.1
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.4e-73 279.3 200 66.0
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.2e-73 278.9 205 65.4
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 4.2e-73 278.5 206 69.9
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 2.1e-72 276.2 205 64.9
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.0e-71 273.9 210 65.2
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.0e-71 272.3 204 66.7
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 3.0e-71 272.3 206 62.6
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 3.9e-71 271.9 201 65.7
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 5.1e-71 271.6 204 63.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.3e-70 268.5 205 65.9
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 5.6e-70 268.1 198 66.7
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 9.6e-70 267.3 205 68.3
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 8.1e-69 264.2 198 65.2
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 6.4e-66 254.6 205 61.5
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 8.7e-63 244.2 207 56.5
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 5.6e-62 241.5 192 61.5
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 4.5e-59 231.9 211 55.0
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.9e-55 218.8 141 76.6
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.5e-54 216.1 205 58.5
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 3.3e-54 215.7 214 51.9
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.0e-51 206.5 208 51.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 3.4e-51 205.7 211 49.8
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.9e-50 202.6 139 71.9
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 3.8e-50 202.2 147 68.0
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 7.1e-49 198.0 145 71.0
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 7.1e-49 198.0 142 71.8
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.1e-44 182.6 148 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.5e-43 180.3 204 46.6
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.0e-43 179.9 148 60.8
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.9e-43 178.3 177 57.1
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.3e-38 162.5 126 61.9
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 5.0e-26 122.1 192 35.9
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.1e-25 120.9 201 38.3
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.7e-24 115.5 193 35.8
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 6.1e-24 115.2 66 77.3
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 5.2e-23 112.1 128 45.3
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.8e-23 111.3 77 63.6
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 7.4e-22 108.2 99 53.5
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 7.4e-22 108.2 137 46.0
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 6.3e-21 105.1 69 68.1
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.3e-18 97.4 74 73.0
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.7e-16 89.0 69 68.1
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.8e-13 79.7 51 70.6
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.5e-11 72.8 62 61.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.9e-09 67.0 118 33.9
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 8.0e-08 61.6 68 50.0
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.0e-07 59.3 50 62.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.0e-07 59.3 50 62.0
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 4.0e-07 59.3 44 56.8


User provided reference genes

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