Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 3.6e-57 224.6 102 100.0
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 5.9e-52 207.2 102 88.2
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 7.7e-52 206.8 102 87.3
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 7.7e-52 206.8 102 87.3
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 3.8e-51 204.5 102 87.3
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 1.9e-50 202.2 101 84.2
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 3.2e-50 201.4 102 86.3
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.2e-50 201.4 102 83.3
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 5.5e-50 200.7 102 82.4
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 7.2e-50 200.3 102 80.4
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 7.2e-50 200.3 102 80.4
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 9.4e-50 199.9 102 84.3
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 9.4e-50 199.9 102 79.4
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.2e-49 199.5 102 83.3
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 2.1e-49 198.7 102 81.4
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 2.7e-49 198.4 102 80.4
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 6.1e-49 197.2 102 79.4
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.8e-48 195.7 102 83.3
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 3.9e-48 194.5 102 78.4
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 6.7e-48 193.7 102 79.4
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 1.5e-47 192.6 102 78.4
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.0e-47 192.2 102 78.4
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.6e-47 191.8 102 81.4
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 2.6e-47 191.8 102 78.4
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.3e-46 189.5 101 78.2
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 2.2e-46 188.7 103 81.6
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 2.8e-46 188.3 102 79.4
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 3.7e-46 188.0 102 77.5
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 3.7e-46 188.0 102 78.4
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 8.2e-46 186.8 102 75.5
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 4.1e-45 184.5 101 77.2
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 5.3e-45 184.1 102 76.5
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 5.3e-45 184.1 102 76.5
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 9.1e-45 183.3 102 75.5
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 4.5e-44 181.0 100 74.0
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 5.9e-44 180.6 102 76.5
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 2.2e-43 178.7 102 75.5
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 3.8e-43 177.9 102 72.5
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 1.5e-42 176.0 102 73.5
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 2.5e-42 175.3 102 72.5
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 2.5e-42 175.3 102 71.6
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.2e-42 174.9 102 71.6
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 7.2e-42 173.7 102 71.6
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 9.4e-42 173.3 102 71.6
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 1.6e-41 172.6 102 68.6
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 1.6e-41 172.6 102 68.6
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 2.1e-41 172.2 102 70.6
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 6.1e-41 170.6 102 67.6
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 6.1e-41 170.6 102 69.6
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 6.1e-41 170.6 103 72.8
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 8.0e-41 170.2 102 68.6
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 1.4e-40 169.5 102 66.7
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 1.4e-40 169.5 89 76.4
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 1.8e-40 169.1 102 69.6
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 2.3e-40 168.7 102 68.6
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 2.3e-40 168.7 102 69.6
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 3.0e-40 168.3 103 70.9
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 6.7e-40 167.2 103 68.9
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 6.7e-40 167.2 102 67.6
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 6.7e-40 167.2 102 68.6
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 6.7e-40 167.2 102 68.6
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 6.7e-40 167.2 102 68.6
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 6.7e-40 167.2 102 68.6
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 6.7e-40 167.2 102 68.6
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 8.8e-40 166.8 103 68.0
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 1.2e-39 166.4 103 68.9
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.2e-39 166.4 100 68.0
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.6e-39 165.2 100 68.0
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 2.6e-39 165.2 102 68.6
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 5.7e-39 164.1 103 68.0
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 7.5e-39 163.7 102 67.6
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 7.5e-39 163.7 102 65.7
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 1.3e-38 162.9 102 65.7
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 1.3e-38 162.9 102 65.7
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 1.7e-38 162.5 102 65.7
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 2.2e-38 162.2 103 67.0
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 3.7e-38 161.4 102 66.7
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 3.7e-38 161.4 103 67.0
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 3.7e-38 161.4 102 64.7
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 8.2e-38 160.2 103 68.0
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 1.1e-37 159.8 103 65.0
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 1.8e-37 159.1 102 64.7
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.4e-37 158.7 103 64.1
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 2.4e-37 158.7 103 67.0
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.1e-37 158.3 103 63.1
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 3.1e-37 158.3 103 63.1
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 4.1e-37 157.9 102 64.7
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 4.1e-37 157.9 101 63.4
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 4.1e-37 157.9 103 66.0
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 5.3e-37 157.5 102 61.8
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 7.0e-37 157.1 97 66.0
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 1.2e-36 156.4 102 61.8
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 1.6e-36 156.0 102 65.7
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 2.0e-36 155.6 103 64.1
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 2.0e-36 155.6 102 60.8
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 3.5e-36 154.8 103 64.1
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 4.5e-36 154.5 103 64.1
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.0e-35 153.3 102 60.8
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 2.2e-35 152.1 103 63.1
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 3.8e-35 151.4 103 63.1
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.8e-35 151.4 75 84.0
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 8.5e-35 150.2 103 63.1
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 8.5e-35 150.2 101 61.4
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 1.2e-33 146.4 103 62.1
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.1e-33 145.6 98 62.2
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.1e-33 145.6 98 62.2
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.0e-32 143.3 100 56.0
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 1.4e-32 142.9 102 59.8
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 2.3e-32 142.1 100 55.0
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 1.5e-31 139.4 91 56.0
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 2.0e-31 139.0 102 63.7
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 1.3e-30 136.3 103 55.3
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.7e-30 136.0 101 53.5
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 1.6e-28 129.4 98 55.1
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 5.9e-28 127.5 100 47.0
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 1.9e-26 122.5 98 55.1
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 1.6e-25 119.4 81 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 2.8e-25 118.6 99 48.5
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 9.8e-23 110.2 81 59.3
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 2.8e-22 108.6 75 62.7
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 1.2e-12 76.6 100 41.0
MCO04G552 Micromonas commoda HOM05D005668 ORTHO05D007082 1.2e-12 76.6 100 39.0
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.2e-12 76.6 41 70.7
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.2e-09 66.6 97 34.0
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 2.1e-09 65.9 100 37.0
BraA03t12780Z Brassica rapa HOM05D005668 ORTHO05D007082 1.4e-08 63.2 41 70.7
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 3.1e-08 62.0 100 32.0
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 4.0e-08 61.6 97 32.0
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 5.2e-08 61.2 97 34.0
SEGI_08848 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 5.2e-08 61.2 99 33.3
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 6.8e-08 60.8 100 31.0
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 6.8e-08 60.8 100 30.0
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 8.9e-08 60.5 97 30.9
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 8.9e-08 60.5 100 30.0
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 8.9e-08 60.5 100 30.0
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 8.9e-08 60.5 100 30.0
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 8.9e-08 60.5 100 30.0
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 1.2e-07 60.1 97 29.9
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 1.2e-07 60.1 100 30.0
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 2.0e-07 59.3 100 30.0
Sabra03G0102000 Salix brachista HOM05D005144 ORTHO05D006112 2.0e-07 59.3 97 30.9
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.6e-07 58.9 97 29.9
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 2.6e-07 58.9 99 32.3
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 2.6e-07 58.9 99 32.3
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 3.4e-07 58.5 97 27.8
Migut.E01282 Erythranthe guttata HOM05D005144 ORTHO05D006112 3.4e-07 58.5 101 30.7
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 3.4e-07 58.5 100 29.0
Carub.0007s1712 Capsella rubella HOM05D005144 ORTHO05D006112 4.4e-07 58.2 99 28.3
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 4.4e-07 58.2 97 27.8
Solyc08g082560.3 Solanum lycopersicum HOM05D005144 ORTHO05D006112 4.4e-07 58.2 97 29.9
Sopen08g030810 Solanum pennellii HOM05D005144 ORTHO05D006112 4.4e-07 58.2 97 29.9
GSVIVG01019559001 Vitis vinifera HOM05D005144 ORTHO05D006112 4.4e-07 58.2 97 29.9
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 5.8e-07 57.8 100 28.0
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 5.8e-07 57.8 100 28.0
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 5.8e-07 57.8 101 28.7
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 5.8e-07 57.8 97 29.9
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 5.8e-07 57.8 100 29.0
Cfa011983 Carpinus fangiana HOM05D005144 ORTHO05D006112 7.5e-07 57.4 97 28.9
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 7.5e-07 57.4 100 31.0
MSTRG.13890 Avicennia marina HOM05D005144 ORTHO05D006112 9.8e-07 57.0 99 28.3
Nitab4.5_0000798g0100 Nicotiana tabacum HOM05D005144 ORTHO05D006112 9.8e-07 57.0 97 29.9
Nitab4.5_0008496g0030 Nicotiana tabacum HOM05D005144 ORTHO05D006112 9.8e-07 57.0 97 29.9
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 9.8e-07 57.0 98 32.7
MSTRG.1800 Avicennia marina HOM05D005144 ORTHO05D006112 1.3e-06 56.6 99 28.3
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 1.3e-06 56.6 97 28.9
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 1.3e-06 56.6 100 30.0
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.3e-06 56.6 97 29.9
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 1.3e-06 56.6 100 28.0
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 1.3e-06 56.6 97 30.9
CiPaw.11G119100 Carya illinoinensis HOM05D005144 ORTHO05D006112 2.2e-06 55.8 97 27.8
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 2.2e-06 55.8 73 34.2
Hma1.2p1_0440F.1_g153460 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 2.2e-06 55.8 97 27.8
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 2.2e-06 55.8 97 27.8
CiPaw.12G081400 Carya illinoinensis HOM05D005144 ORTHO05D006112 2.9e-06 55.5 97 27.8
Haze_09089 Corylus avellana HOM05D005144 ORTHO05D006112 2.9e-06 55.5 97 26.8
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 2.9e-06 55.5 97 28.9
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 2.9e-06 55.5 97 28.9
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 3.7e-06 55.1 105 33.3
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 3.7e-06 55.1 100 33.0
Lsat_1_v5_gn_6_8420 Lactuca sativa HOM05D005144 ORTHO05D006112 6.4e-06 54.3 97 28.9
TWI60G1459 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 8.3e-06 53.9 97 28.9
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 8.3e-06 53.9 97 30.9


User provided reference genes

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