Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 1.1e-78 296.6 149 100.0
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 4.9e-63 244.6 148 82.4
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.0e-60 236.9 148 81.8
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 9.5e-59 230.3 145 80.0
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 9.5e-59 230.3 147 78.2
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 6.1e-58 227.6 147 77.6
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.0e-57 226.9 145 77.9
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 3.0e-57 225.3 145 77.2
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 4.0e-57 224.9 147 77.6
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 5.2e-57 224.6 144 77.8
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 6.8e-57 224.2 145 77.2
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 6.8e-57 224.2 147 76.2
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 8.9e-57 223.8 145 76.6
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.5e-56 223.0 148 73.6
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 2.6e-56 222.2 145 75.9
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 3.4e-56 221.9 149 75.8
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 9.8e-56 220.3 145 76.6
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.7e-55 219.5 147 74.1
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 1.7e-55 219.5 145 75.2
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 4.9e-55 218.0 145 74.5
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 6.4e-55 217.6 145 74.5
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.1e-54 216.9 145 75.2
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.4e-54 215.7 147 73.5
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 3.2e-54 215.3 144 76.4
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.2e-54 215.3 147 72.8
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 4.1e-54 214.9 145 73.1
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 5.4e-54 214.5 145 72.4
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 7.0e-54 214.2 145 73.1
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 7.0e-54 214.2 146 74.0
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 7.0e-54 214.2 149 73.2
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 1.6e-53 213.0 146 76.7
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.0e-53 212.6 144 73.6
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 2.0e-53 212.6 147 74.1
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 2.7e-53 212.2 146 72.6
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 2.7e-53 212.2 145 71.7
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 7.8e-53 210.7 145 72.4
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 7.8e-53 210.7 145 71.7
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.7e-52 209.5 145 72.4
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 3.0e-52 208.8 143 72.7
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 3.9e-52 208.4 165 67.3
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 5.0e-52 208.0 147 71.4
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 5.0e-52 208.0 147 71.4
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 6.6e-52 207.6 145 71.0
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 8.6e-52 207.2 146 69.2
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 8.6e-52 207.2 147 73.5
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 1.1e-51 206.8 149 69.8
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 2.5e-51 205.7 150 69.3
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.3e-51 205.3 147 70.7
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.2e-50 203.4 145 71.0
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.2e-50 203.4 145 71.0
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 3.6e-50 201.8 145 70.3
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.1e-49 200.3 149 67.8
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.4e-49 199.9 149 67.8
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.4e-49 199.9 147 70.1
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.4e-49 199.9 151 68.2
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 3.1e-49 198.7 145 69.7
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 4.0e-49 198.4 147 66.0
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 6.8e-49 197.6 128 73.4
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.2e-48 196.8 146 67.1
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 1.5e-48 196.4 145 69.0
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.5e-48 196.4 147 68.7
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 2.0e-48 196.1 136 69.9
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.6e-48 195.7 148 68.9
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 3.4e-48 195.3 153 65.4
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-48 195.3 145 67.6
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 4.4e-48 194.9 149 66.4
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 4.4e-48 194.9 147 66.0
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 5.8e-48 194.5 147 68.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.8e-48 194.5 145 68.3
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 5.8e-48 194.5 140 69.3
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 7.5e-48 194.1 145 69.0
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 9.8e-48 193.7 149 63.8
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 1.3e-47 193.4 140 68.6
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.7e-47 193.0 148 67.6
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.7e-47 193.0 147 66.7
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 4.9e-47 191.4 147 66.0
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 4.9e-47 191.4 147 66.0
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 8.3e-47 190.7 148 67.6
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 8.3e-47 190.7 146 66.4
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 8.3e-47 190.7 149 68.5
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.1e-46 190.3 146 67.1
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.1e-46 190.3 147 67.3
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.9e-46 189.5 139 66.2
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.9e-46 189.5 153 64.1
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 3.2e-46 188.7 147 65.3
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.2e-46 188.7 146 68.5
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 5.4e-46 188.0 145 65.5
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.2e-45 186.8 146 65.8
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.0e-45 186.0 146 67.1
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 2.0e-45 186.0 146 65.8
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 3.5e-45 185.3 232 46.6
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 3.5e-45 185.3 150 64.0
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.6e-45 184.9 122 73.8
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.6e-45 184.9 145 64.1
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-44 183.3 132 68.9
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.3e-44 183.3 146 62.3
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.7e-44 183.0 147 65.3
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.7e-44 183.0 207 52.2
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 2.3e-44 182.6 145 63.4
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 3.0e-44 182.2 147 66.0
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 3.9e-44 181.8 145 63.4
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 5.0e-44 181.4 127 67.7
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 5.0e-44 181.4 146 65.8
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 6.6e-44 181.0 144 66.7
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 8.6e-44 180.6 149 64.4
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 8.6e-44 180.6 149 60.4
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.1e-43 180.3 122 71.3
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.1e-43 180.3 122 71.3
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 1.5e-43 179.9 145 64.8
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.5e-43 177.2 122 70.5
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 9.5e-43 177.2 146 62.3
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 2.1e-42 176.0 147 62.6
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 2.1e-42 176.0 148 62.8
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.1e-41 173.7 115 74.8
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.1e-41 173.7 144 61.1
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 2.3e-41 172.6 131 67.9
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 4.0e-41 171.8 152 60.5
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 5.8e-40 167.9 103 80.6
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 5.8e-40 167.9 147 57.1
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.9e-39 165.6 148 62.2
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 6.4e-39 164.5 151 58.3
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.1e-38 163.7 145 59.3
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 5.4e-38 161.4 105 76.2
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 2.7e-37 159.1 133 63.2
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 4.6e-37 158.3 145 57.2
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 2.8e-34 149.1 103 71.8
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.4e-33 146.7 145 54.5
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 2.0e-32 142.9 122 59.8
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 5.8e-32 141.4 96 69.8
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 5.4e-30 134.8 104 69.2
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 6.2e-26 121.3 94 67.0
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.1e-25 120.6 94 67.0
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.1e-25 120.6 94 67.0
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.0e-24 116.3 91 63.7
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 2.0e-24 116.3 294 32.3
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 5.1e-20 101.7 105 55.2
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 6.2e-18 94.7 153 38.6
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 6.2e-18 94.7 156 39.1
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 8.1e-18 94.4 81 59.3
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 9.0e-17 90.9 140 42.9
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 2.9e-15 85.9 155 35.5
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.4e-14 83.6 61 67.2
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.2e-13 80.5 63 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.1e-13 79.7 142 36.6
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.1e-11 73.9 148 33.1
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.5e-11 73.6 55 65.5
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.1e-10 69.7 44 72.7
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 3.1e-09 65.9 44 70.5
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 1.1e-06 57.4 43 69.8
AagrBONN_evm.TU.Sc2ySwM_117.2582 Anthoceros agrestis HOM05D004812 ORTHO05D005721 4.2e-06 55.5 101 39.6
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 4.2e-06 55.5 61 44.3
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 9.3e-06 54.3 62 40.3


User provided reference genes

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