Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 2.4e-59 231.9 111 100.0
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 1.1e-11 73.6 56 69.6
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 7.2e-11 70.9 56 64.3
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 1.6e-10 69.7 46 76.1
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 2.1e-10 69.3 46 73.9
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 2.1e-10 69.3 56 67.9
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 2.7e-10 68.9 56 64.3
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 3.6e-10 68.6 56 64.3
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 4.6e-10 68.2 46 73.9
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 6.1e-10 67.8 46 71.7
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 6.1e-10 67.8 56 62.5
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 6.1e-10 67.8 56 62.5
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 6.1e-10 67.8 56 62.5
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 7.9e-10 67.4 56 62.5
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 7.9e-10 67.4 56 62.5
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.0e-09 67.0 56 62.5
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 1.0e-09 67.0 56 62.5
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 1.0e-09 67.0 56 62.5
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 1.0e-09 67.0 46 73.9
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 1.4e-09 66.6 46 71.7
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 1.4e-09 66.6 56 60.7
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.8e-09 66.2 56 60.7
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 2.3e-09 65.9 46 69.6
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 2.3e-09 65.9 46 69.6
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.3e-09 65.9 56 58.9
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 3.0e-09 65.5 56 60.7
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 3.9e-09 65.1 56 60.7
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 5.1e-09 64.7 56 58.9
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 5.1e-09 64.7 56 58.9
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.1e-08 63.5 56 57.1
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 1.1e-08 63.5 56 58.9
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 1.1e-08 63.5 56 57.1
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.5e-08 63.2 56 58.9
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 1.5e-08 63.2 56 58.9
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.5e-08 63.2 46 67.4
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 1.9e-08 62.8 56 57.1
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 2.5e-08 62.4 56 57.1
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 3.3e-08 62.0 46 65.2
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 3.3e-08 62.0 56 57.1
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 4.3e-08 61.6 56 57.1
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 4.3e-08 61.6 56 57.1
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 4.3e-08 61.6 56 57.1
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 4.3e-08 61.6 56 57.1
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 4.3e-08 61.6 56 55.4
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 5.7e-08 61.2 56 57.1
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 5.7e-08 61.2 56 53.6
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 5.7e-08 61.2 56 53.6
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 5.7e-08 61.2 56 57.1
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 7.4e-08 60.8 46 65.2
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 7.4e-08 60.8 46 63.0
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 7.4e-08 60.8 46 63.0
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 7.4e-08 60.8 56 55.4
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 9.7e-08 60.5 56 55.4
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 1.3e-07 60.1 56 55.4
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 1.3e-07 60.1 56 55.4
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 1.7e-07 59.7 56 51.8
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 1.7e-07 59.7 46 63.0
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.7e-07 59.7 46 65.2
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 1.7e-07 59.7 56 53.6
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 1.7e-07 59.7 56 51.8
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 2.2e-07 59.3 56 51.8
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 2.2e-07 59.3 56 57.1
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.2e-07 59.3 56 57.1
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.2e-07 59.3 56 57.1
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 2.2e-07 59.3 56 53.6
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 2.8e-07 58.9 56 57.1
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 2.8e-07 58.9 56 53.6
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 2.8e-07 58.9 56 51.8
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 2.8e-07 58.9 56 51.8
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 3.7e-07 58.5 46 65.2
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 4.8e-07 58.2 56 50.0
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 4.8e-07 58.2 52 53.8
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 4.8e-07 58.2 55 54.5
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 4.8e-07 58.2 56 53.6
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 4.8e-07 58.2 56 53.6
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 8.2e-07 57.4 56 53.6
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 8.2e-07 57.4 46 63.0
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 8.2e-07 57.4 56 51.8
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 8.2e-07 57.4 56 51.8
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 1.1e-06 57.0 65 49.2
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 1.1e-06 57.0 56 51.8
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 1.1e-06 57.0 56 53.6
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 1.4e-06 56.6 48 58.3
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 1.4e-06 56.6 56 51.8
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 1.4e-06 56.6 56 48.2
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 1.8e-06 56.2 56 51.8
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 5.3e-06 54.7 56 51.8
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 9.1e-06 53.9 62 48.4
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 9.1e-06 53.9 49 55.1


User provided reference genes

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