Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 0.0e+00 2139.8 1167 100.0
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 7.2e-61 240.4 1205 29.0
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 7.7e-47 193.7 1303 26.1
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.5e-45 188.7 1209 27.3
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 4.0e-43 181.4 1183 28.2
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.3e-41 176.4 1243 25.8
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.1e-36 159.1 1244 24.8
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 9.8e-34 150.2 1307 25.7
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.5e-31 141.7 1178 25.9
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.2e-28 133.3 1356 25.2
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 2.1e-28 132.5 1253 25.8
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.3e-25 123.2 1327 23.9
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 4.9e-25 121.3 1252 24.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.3e-21 108.2 985 22.9
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.2e-20 106.7 1432 23.2
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 4.0e-19 101.7 340 33.5
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.3e-17 96.7 1286 24.2
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.7e-17 96.3 1235 22.5
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.1e-16 93.6 1271 22.8
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 2.4e-16 92.4 1343 22.4
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.2e-16 92.0 1342 22.1
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.0e-15 89.4 1192 23.9
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 3.5e-15 88.6 1246 23.4
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.0e-14 87.0 1271 22.3
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 1.7e-14 86.3 572 25.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 3.9e-14 85.1 1379 22.9
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 6.6e-14 84.3 89 47.2
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 5.6e-13 81.3 98 41.8
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.6e-12 79.7 230 31.3
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.6e-12 79.7 1333 24.8
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.1e-12 79.3 53 64.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.1e-12 79.3 1290 23.6
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 4.7e-12 78.2 60 55.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 6.2e-12 77.8 1314 22.4
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.8e-11 76.3 63 52.4
Eucgr.B03235 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.8e-11 76.3 445 28.5
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.5e-10 73.2 210 30.0
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.6e-10 72.4 1251 23.2
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 4.4e-10 71.6 56 57.1
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 4.4e-10 71.6 60 50.0
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.8e-10 71.2 1243 22.9
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 7.5e-10 70.9 152 32.2
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.7e-09 69.7 85 41.2
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.9e-09 68.9 73 46.6
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 4.9e-09 68.2 1291 21.3
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 6.4e-09 67.8 52 57.7
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.1e-08 67.0 77 42.9
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 2.4e-08 65.9 62 43.5
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 3.2e-08 65.5 62 41.9
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.2e-08 65.5 52 50.0
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 3.2e-08 65.5 1341 22.4
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.2e-08 65.5 59 49.2
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.1e-08 65.1 73 39.7
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 5.4e-08 64.7 58 41.4
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 5.4e-08 64.7 81 38.3
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 7.0e-08 64.3 104 33.7
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 7.0e-08 64.3 1232 23.5
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 7.0e-08 64.3 53 47.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 9.2e-08 63.9 66 42.4
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 9.2e-08 63.9 75 44.0
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 1.2e-07 63.5 495 26.1
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.2e-07 63.5 61 45.9
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.6e-07 63.2 501 24.0
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.6e-07 63.2 105 35.2
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.0e-07 62.8 72 38.9
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.0e-07 62.8 85 40.0
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.7e-07 62.4 94 38.3
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.7e-07 62.4 65 38.5
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.7e-07 62.4 65 38.5
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.5e-07 62.0 58 53.4
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 4.6e-07 61.6 1205 22.9
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 4.6e-07 61.6 52 50.0
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 4.6e-07 61.6 52 50.0
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.6e-07 61.6 56 44.6
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 6.0e-07 61.2 70 37.1
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 7.8e-07 60.8 75 41.3
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 7.8e-07 60.8 62 40.3
Actinidia08108 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.3e-06 60.1 555 25.0
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 3.0e-06 58.9 63 44.4
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.0e-06 58.9 92 32.6
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.9e-06 58.5 70 41.4
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 3.9e-06 58.5 205 29.3
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 3.9e-06 58.5 206 29.6
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 3.9e-06 58.5 55 41.8
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.9e-06 58.5 1225 22.0
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 5.0e-06 58.2 54 51.9
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.6e-06 57.8 55 43.6
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 6.6e-06 57.8 54 44.4
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 8.6e-06 57.4 55 45.5
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 8.6e-06 57.4 51 43.1
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 8.6e-06 57.4 56 41.1
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 8.6e-06 57.4 128 29.7


User provided reference genes

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