Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.5e-58 229.6 142 100.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 5.2e-22 108.2 64 81.2
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.4e-19 98.2 59 78.0
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.4e-19 98.2 59 78.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 7.0e-19 97.8 69 69.6
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.2e-18 97.1 61 72.1
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.2e-18 97.1 59 76.3
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.2e-18 97.1 59 76.3
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.2e-18 97.1 59 76.3
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.6e-18 96.7 57 78.9
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.6e-18 96.7 57 78.9
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.7e-18 95.9 58 74.1
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 3.5e-18 95.5 68 70.6
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 3.5e-18 95.5 57 75.4
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 3.5e-18 95.5 55 80.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 4.5e-18 95.1 65 67.7
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 4.5e-18 95.1 55 78.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 4.5e-18 95.1 54 79.6
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 5.9e-18 94.7 60 71.7
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 5.9e-18 94.7 66 66.7
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.9e-18 94.7 61 73.8
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.9e-18 94.7 64 67.2
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 5.9e-18 94.7 57 75.4
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 7.7e-18 94.4 65 67.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 7.7e-18 94.4 55 78.2
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 7.7e-18 94.4 55 78.2
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 7.7e-18 94.4 59 71.2
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 7.7e-18 94.4 61 68.9
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.0e-17 94.0 56 73.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 1.0e-17 94.0 53 81.1
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.0e-17 94.0 55 78.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.0e-17 94.0 57 77.2
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.0e-17 94.0 55 78.2
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.0e-17 94.0 54 77.8
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.0e-17 94.0 65 66.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.3e-17 93.6 60 71.7
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.3e-17 93.6 55 78.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.3e-17 93.6 55 78.2
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.3e-17 93.6 57 75.4
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.7e-17 93.2 56 73.2
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.7e-17 93.2 61 68.9
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.7e-17 93.2 55 76.4
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-17 92.8 60 71.7
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.3e-17 92.8 64 67.2
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 2.3e-17 92.8 53 79.2
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.3e-17 92.8 59 72.9
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 2.3e-17 92.8 61 67.2
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 2.9e-17 92.4 53 79.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 2.9e-17 92.4 53 79.2
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.9e-17 92.4 51 82.4
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.9e-17 92.4 51 82.4
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.9e-17 92.4 57 75.4
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.9e-17 92.4 57 75.4
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.9e-17 92.4 57 75.4
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.9e-17 92.4 54 79.6
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.9e-17 92.4 54 77.8
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.9e-17 92.4 63 66.7
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 2.9e-17 92.4 59 71.2
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 3.8e-17 92.0 55 74.5
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 79.2
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 3.8e-17 92.0 55 74.5
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 3.8e-17 92.0 53 77.4
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.0e-17 91.7 55 74.5
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 5.0e-17 91.7 58 70.7
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 5.0e-17 91.7 64 65.6
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 5.0e-17 91.7 58 69.0
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 6.5e-17 91.3 59 72.9
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 6.5e-17 91.3 51 82.4
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 6.5e-17 91.3 51 82.4
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 6.5e-17 91.3 51 82.4
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 6.5e-17 91.3 51 82.4
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 6.5e-17 91.3 51 82.4
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 6.5e-17 91.3 61 68.9
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 6.5e-17 91.3 71 60.6
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 6.5e-17 91.3 51 80.4
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 6.5e-17 91.3 61 68.9
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 6.5e-17 91.3 53 75.5
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.5e-17 91.3 53 77.4
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 8.6e-17 90.9 61 70.5
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 8.6e-17 90.9 61 70.5
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 8.6e-17 90.9 51 80.4
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 8.6e-17 90.9 53 75.5
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 8.6e-17 90.9 53 75.5
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.6e-17 90.9 58 69.0
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.6e-17 90.9 60 68.3
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 8.6e-17 90.9 62 66.1
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.1e-16 90.5 54 74.1
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.1e-16 90.5 55 72.7
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.1e-16 90.5 51 78.4
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.1e-16 90.5 68 66.2
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.1e-16 90.5 53 79.2
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-16 90.1 50 80.0
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.5e-16 90.1 51 80.4
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.5e-16 90.1 58 67.2
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.5e-16 90.1 50 80.0
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.5e-16 90.1 64 64.1
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.5e-16 90.1 59 69.5
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.5e-16 90.1 51 76.5
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.5e-16 90.1 58 67.2
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.5e-16 90.1 58 67.2
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 1.9e-16 89.7 51 78.4
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.9e-16 89.7 54 72.2
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.9e-16 89.7 59 67.8
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.9e-16 89.7 58 67.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.9e-16 89.7 64 65.6
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.5e-16 89.4 51 76.5
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.5e-16 89.4 57 66.7
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.3e-16 89.0 51 78.4
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.3e-16 89.0 51 78.4
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 3.3e-16 89.0 51 76.5
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 5.5e-16 88.2 57 71.9
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 7.2e-16 87.8 65 63.1
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 9.5e-16 87.4 51 72.5
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.2e-15 87.0 51 72.5
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.6e-15 86.7 54 75.9
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.1e-15 86.3 51 76.5
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.7e-15 85.1 64 64.1
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.7e-15 85.1 64 64.1
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.4e-14 83.6 51 74.5
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.3e-14 82.8 51 70.6
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.3e-14 82.8 51 68.6
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 3.0e-14 82.4 56 64.3
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 4.0e-14 82.0 52 71.2
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 4.0e-14 82.0 52 71.2
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 5.2e-14 81.6 51 68.6
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.6e-13 79.3 53 66.0
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.7e-13 78.2 58 56.9
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 4.1e-11 72.0 52 59.6
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 1.2e-10 70.5 44 72.7
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 5.0e-09 65.1 55 54.5
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 1.1e-08 63.9 55 52.7
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 9.5e-08 60.8 54 51.9
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 4.7e-07 58.5 54 50.0
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 8.0e-07 57.8 44 68.2
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.8e-06 56.6 51 56.9


User provided reference genes

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