Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 0.0e+00 1213.7 593 100.0
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 0.0e+00 1077.4 609 87.2
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.6e-253 878.6 657 69.7
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.6e-253 878.6 657 69.7
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 3.6e-234 815.1 604 68.7
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.5e-227 792.3 660 63.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.3e-220 769.2 659 62.4
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.6e-220 767.3 657 61.5
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 5.7e-216 754.6 688 59.3
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 5.6e-211 738.0 653 59.7
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 4.0e-209 731.9 654 60.1
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.2e-208 730.3 657 60.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.0e-208 729.6 654 59.9
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 5.8e-208 728.0 657 60.0
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 3.7e-207 725.3 652 59.0
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.9e-206 723.0 660 60.0
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 9.2e-206 720.7 666 58.9
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.0e-205 719.5 666 58.4
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.3e-201 706.1 658 57.9
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 4.0e-201 705.3 658 58.5
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 8.9e-201 704.1 637 61.4
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.5e-200 703.4 671 57.2
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 5.8e-200 701.4 659 57.5
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.8e-200 701.4 659 57.5
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.8e-200 701.4 659 57.5
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 5.8e-200 701.4 671 58.0
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.5e-200 701.0 650 57.8
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.3e-199 700.3 640 60.6
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.7e-199 699.9 657 57.1
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.7e-199 699.9 648 57.3
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.9e-199 699.1 653 58.3
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 4.9e-199 698.4 650 58.6
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 8.3e-199 697.6 650 58.3
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-198 697.2 661 56.6
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.1e-198 697.2 657 57.7
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.4e-198 696.8 664 56.6
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.4e-198 696.0 650 58.3
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 3.2e-198 695.7 605 60.7
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.1e-198 695.3 665 56.2
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 9.2e-198 694.1 650 58.2
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 3.5e-197 692.2 563 62.2
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 6.0e-197 691.4 658 57.0
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.0e-197 691.4 664 57.7
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.0e-197 691.4 664 57.7
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 6.0e-197 691.4 555 62.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.7e-196 689.9 660 56.4
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 8.6e-196 687.6 530 65.8
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.1e-195 687.2 658 56.1
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.1e-195 687.2 671 56.8
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.5e-195 686.0 663 57.8
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 9.5e-195 684.1 564 61.3
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.2e-194 683.7 652 57.7
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.2e-194 683.7 662 55.9
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.6e-194 683.3 583 60.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.1e-194 682.9 554 63.9
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 4.7e-194 681.8 548 64.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.2e-194 681.4 665 55.6
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 6.2e-194 681.4 660 55.8
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 8.1e-194 681.0 661 55.2
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.1e-193 680.6 661 55.2
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 3.1e-193 679.1 658 57.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 5.2e-193 678.3 552 63.0
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.5e-192 676.8 654 55.5
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 2.0e-192 676.4 670 54.5
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.4e-192 675.2 552 62.9
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.8e-192 674.9 666 56.2
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 4.1e-190 668.7 559 61.9
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 4.1e-190 668.7 552 63.8
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 5.4e-190 668.3 658 57.0
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 5.4e-190 668.3 552 63.8
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.6e-189 666.8 666 56.0
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 1.6e-189 666.8 552 63.2
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 2.7e-189 666.0 670 55.7
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.7e-188 663.3 554 61.6
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 4.3e-187 658.7 666 56.9
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 4.0e-185 652.1 539 62.0
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.4e-184 649.0 657 54.8
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 6.4e-183 644.8 570 58.9
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 6.4e-183 644.8 570 58.9
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.9e-182 643.3 660 55.6
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.6e-181 640.2 645 53.6
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.6e-181 640.2 617 59.2
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.7e-180 636.7 658 55.0
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 2.3e-180 636.3 656 55.5
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 2.3e-180 636.3 656 55.5
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.3e-180 636.3 650 54.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 6.6e-180 634.8 662 53.2
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.9e-179 633.3 654 55.4
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.9e-179 633.3 565 58.6
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.5e-179 632.9 657 55.1
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.5e-179 632.9 651 55.1
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 7.3e-179 631.3 555 58.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 9.6e-179 630.9 655 53.4
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.3e-178 630.6 565 58.8
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.6e-178 630.2 557 58.3
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 2.1e-178 629.8 658 57.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 2.1e-178 629.8 634 54.9
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 6.2e-178 628.2 667 54.7
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 9.9e-176 620.9 632 53.5
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.7e-175 620.2 618 55.0
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 4.2e-174 615.5 555 57.8
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 5.4e-174 615.1 625 54.2
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 2.1e-173 613.2 578 56.6
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.0e-172 610.9 599 54.1
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 5.1e-172 608.6 530 59.1
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 5.1e-172 608.6 554 57.2
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 7.4e-171 604.7 615 53.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 9.0e-169 597.8 663 50.1
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-168 597.0 552 56.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.5e-168 597.0 525 61.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 7.6e-168 594.7 663 52.2
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.3e-167 594.0 663 51.9
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.3e-167 594.0 663 51.9
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 2.7e-165 586.3 519 60.7
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 8.7e-164 581.3 652 52.8
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.6e-162 577.0 658 50.6
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 3.4e-160 569.3 605 52.6
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 5.5e-158 562.0 660 50.6
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 1.5e-155 553.9 389 72.8
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 8.2e-154 548.1 465 62.2
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.3e-151 540.8 422 66.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 8.5e-151 538.1 468 63.5
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.7e-149 533.1 640 47.3
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 4.1e-145 519.2 671 47.1
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 4.1e-137 492.7 550 51.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.8e-132 477.2 588 47.1
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 5.0e-119 432.6 597 42.7
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.5e-115 421.0 599 43.7
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.5e-110 403.7 570 44.7
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 6.3e-106 389.0 374 54.8
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.8e-101 373.6 386 50.0
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 9.5e-94 348.6 330 52.7
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.2e-65 253.4 235 56.2
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 6.0e-64 249.6 325 45.8
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 9.6e-62 242.3 211 60.7
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.2e-59 235.3 361 43.2
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.6e-56 224.9 601 30.8
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.3e-37 162.2 189 48.1
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 3.4e-35 154.1 164 50.6
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.4e-28 131.3 64 93.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 2.0e-27 128.3 146 50.7
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.6e-24 117.5 101 60.4
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 8.5e-18 96.3 85 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 3.2e-17 94.4 163 33.7
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-16 91.3 223 35.9
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 7.4e-14 83.2 164 30.5
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 2.6e-11 74.7 134 40.3
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 9.4e-09 66.2 57 61.4
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 4.4e-06 57.4 35 71.4


User provided reference genes

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