Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 2.9e-282 974.5 493 100.0
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.0e-214 749.2 492 78.3
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.9e-209 732.6 490 76.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 9.3e-204 713.8 494 73.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.4e-191 673.3 489 71.2
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.4e-188 663.3 487 69.2
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.6e-187 659.8 490 68.4
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 8.0e-187 657.5 490 68.2
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 8.0e-187 657.5 490 68.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.3e-186 656.0 490 67.8
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 2.3e-186 656.0 471 71.5
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 3.0e-186 655.6 471 70.9
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 6.7e-186 654.4 468 72.2
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.1e-185 653.7 477 69.4
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.1e-185 653.7 526 65.0
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.1e-185 653.7 477 70.4
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.5e-185 653.3 476 69.7
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.0e-185 652.9 471 70.7
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.6e-185 652.5 490 67.1
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.4e-185 651.7 471 70.7
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 7.4e-185 651.0 496 66.5
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.1e-183 647.1 490 66.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.4e-183 646.7 502 66.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 1.4e-183 646.7 501 67.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.8e-183 646.4 495 67.5
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 5.3e-183 644.8 477 69.0
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-182 643.7 490 66.7
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.5e-182 641.7 518 65.6
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.0e-181 640.6 496 68.3
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.2e-181 639.4 475 68.0
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 3.8e-181 638.6 498 66.7
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.8e-181 638.6 474 69.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 3.8e-181 638.6 470 68.7
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 6.5e-181 637.9 508 65.4
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 8.5e-181 637.5 471 67.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.1e-180 637.1 476 68.3
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.5e-180 636.7 474 69.2
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.9e-180 636.3 473 67.9
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.2e-180 635.6 498 66.1
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 5.5e-180 634.8 471 67.5
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.2e-179 633.6 498 66.7
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.7e-179 631.7 462 69.3
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 4.7e-179 631.7 456 70.2
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.7e-179 631.7 473 68.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.4e-178 630.2 499 66.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.8e-178 629.8 457 69.8
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.3e-178 629.4 495 65.9
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 4.0e-178 628.6 481 68.4
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 5.2e-178 628.2 477 65.8
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 6.7e-178 627.9 512 64.5
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 6.7e-178 627.9 473 68.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.0e-177 626.3 479 68.7
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 9.7e-177 624.0 464 69.4
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.8e-176 622.5 497 66.0
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 6.3e-176 621.3 458 69.0
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 8.2e-176 620.9 490 64.7
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 4.1e-175 618.6 495 65.7
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 7.0e-175 617.8 495 64.4
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.2e-174 617.1 478 66.9
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.3e-173 613.6 499 63.7
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 3.8e-173 612.1 459 68.4
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 5.0e-173 611.7 482 65.4
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 8.5e-173 610.9 469 66.5
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 8.5e-173 610.9 445 68.5
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 9.4e-172 607.4 470 67.7
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.2e-171 607.1 508 63.6
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.6e-171 606.7 458 67.9
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.6e-171 606.7 521 61.2
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.7e-171 605.1 471 64.8
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.8e-170 603.2 451 67.4
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-169 599.4 424 70.5
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 6.3e-168 594.7 471 64.1
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 7.0e-167 591.3 445 67.0
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.2e-166 590.5 471 63.5
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.6e-166 590.1 469 64.0
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 5.9e-166 588.2 445 66.7
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 1.0e-165 587.4 471 62.2
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.3e-165 587.0 444 66.2
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.3e-165 587.0 444 66.2
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.5e-164 583.6 444 65.1
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.5e-164 582.8 502 60.2
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 3.3e-164 582.4 471 63.3
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 3.3e-164 582.4 471 63.3
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.1e-163 579.7 472 63.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 5.7e-161 571.6 454 63.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.2e-160 569.7 448 67.0
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 3.3e-156 555.8 523 57.9
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.0e-154 550.8 471 60.9
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.0e-153 546.6 399 68.7
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.4e-153 545.8 399 68.2
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-150 537.3 495 58.4
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.6e-150 537.0 486 58.2
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 5.6e-148 528.5 564 52.5
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.5e-148 527.7 490 61.0
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.7e-144 516.9 457 60.4
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 5.4e-143 511.9 490 56.9
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 2.3e-141 506.5 371 68.5
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 8.6e-141 504.6 470 57.4
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.5e-140 503.1 485 57.5
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.6e-140 501.9 394 65.7
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 6.4e-136 488.4 399 61.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 3.9e-125 452.6 338 68.9
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 5.8e-121 438.7 464 51.1
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.5e-116 423.3 448 50.0
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 6.7e-101 372.1 267 70.4
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.9e-100 370.5 231 78.8
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 5.3e-90 335.9 254 68.5
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.1e-86 323.9 177 91.5
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.0e-85 321.6 201 78.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.8e-85 320.9 294 59.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 3.0e-85 320.1 202 77.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-84 318.2 239 64.9
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-84 318.2 239 64.9
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 4.8e-83 312.8 268 62.3
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.9e-79 300.8 326 48.5
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 3.9e-77 293.1 304 50.3
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 8.8e-77 292.0 345 45.5
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.8e-75 287.0 221 65.6
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 5.3e-74 282.7 188 74.5
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.5e-73 279.6 216 67.1
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 4.5e-73 279.6 174 75.9
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.5e-72 275.4 225 64.0
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.5e-71 272.7 218 63.3
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 7.7e-65 252.3 251 53.0
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.7e-59 234.6 170 67.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.2e-56 224.2 157 67.5
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.7e-52 209.5 163 64.4
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 1.4e-42 178.3 427 28.1
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-42 178.3 156 62.2
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.9e-37 159.1 228 45.6
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 5.4e-34 149.8 495 30.3
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.6e-32 142.5 132 60.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.0e-30 136.0 164 44.5
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.0e-28 131.3 101 63.4
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 7.8e-25 119.4 150 43.3
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 5.8e-20 103.2 271 31.7
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 5.8e-20 103.2 55 87.3
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.9e-19 100.9 54 88.9
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 5.1e-16 90.1 63 69.8
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 4.0e-13 80.5 154 37.0
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 5.8e-12 76.6 77 51.9
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 8.4e-11 72.8 69 62.3
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 1.1e-10 72.4 153 34.6
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.4e-10 71.2 86 50.0
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-08 65.5 105 41.9


User provided reference genes

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