Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 0.0e+00 1143.3 595 100.0
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.9e-300 1034.6 596 90.4
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 6.2e-295 1016.9 596 88.4
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.4e-294 1015.8 596 87.9
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 7.6e-293 1010.0 596 87.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 6.4e-292 1006.9 599 87.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.2e-291 1004.6 596 87.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.6e-290 1002.3 596 87.1
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.5e-288 995.7 596 86.4
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 6.9e-286 986.9 588 85.7
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 9.0e-286 986.5 594 86.0
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.0e-285 985.3 595 85.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 5.8e-285 983.8 595 85.2
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.2e-279 963.4 594 83.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.2e-279 963.4 594 83.8
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 7.7e-277 956.8 599 83.5
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.3e-276 956.1 597 82.4
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 5.0e-276 954.1 600 82.8
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.9e-273 944.5 598 81.4
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.1e-272 943.0 596 81.7
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 3.7e-271 937.9 599 81.5
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 8.2e-271 936.8 597 82.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 9.1e-270 933.3 599 82.5
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 2.0e-269 932.2 603 81.6
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.5e-269 931.0 593 79.9
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.9e-268 928.3 595 81.2
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.8e-268 927.9 593 80.1
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 3.3e-264 914.8 593 79.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.4e-264 914.4 596 80.7
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.2e-263 912.1 596 79.5
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 7.0e-262 907.1 594 78.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.0e-261 905.6 596 79.2
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.0e-261 905.6 595 80.3
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.7e-260 902.5 586 79.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.9e-260 901.7 594 79.0
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.9e-259 899.0 593 78.6
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.5e-259 898.7 595 76.8
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 5.5e-259 897.5 594 77.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 5.5e-259 897.5 598 77.6
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.2e-258 896.3 594 77.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.7e-258 895.2 594 77.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 6.1e-258 894.0 594 77.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.0e-257 893.3 596 77.7
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.8e-257 892.5 598 77.6
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 8.8e-257 890.2 593 78.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.5e-256 889.4 595 78.2
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.7e-255 885.9 595 77.3
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 7.7e-253 877.1 598 76.8
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.3e-252 876.3 871 58.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.7e-252 875.9 608 75.2
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.9e-252 875.2 598 75.6
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 6.5e-252 874.0 604 75.5
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-251 873.2 600 75.2
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-251 872.8 600 75.2
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.5e-251 872.8 600 74.8
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.2e-250 869.8 595 77.0
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.1e-250 869.0 599 75.1
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.7e-250 868.6 600 75.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.7e-250 868.6 602 74.9
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.4e-249 866.3 604 72.2
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.8e-249 865.9 604 72.0
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.8e-249 865.9 606 75.4
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.0e-249 865.1 598 75.8
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 4.0e-249 864.8 594 77.3
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 4.0e-249 864.8 594 74.9
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 5.2e-249 864.4 601 75.2
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.0e-248 862.4 602 74.3
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.0e-248 862.4 600 74.3
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.4e-248 861.3 602 74.1
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 7.5e-248 860.5 601 75.0
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.3e-247 859.8 602 73.8
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.1e-246 856.7 607 73.5
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.8e-246 855.9 611 74.1
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.6e-245 852.8 598 75.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.3e-244 849.7 593 73.9
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.3e-244 849.7 593 73.9
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 5.5e-243 844.3 600 72.8
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 7.2e-243 844.0 601 73.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 8.0e-242 840.5 596 73.0
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.0e-241 840.1 599 73.0
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.3e-241 839.0 603 73.3
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-240 835.9 594 73.1
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-240 835.9 594 73.1
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.0e-240 835.9 594 73.1
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.6e-240 835.5 605 71.9
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 4.4e-240 834.7 597 72.7
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.3e-239 833.2 600 72.8
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.3e-239 833.2 601 73.2
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.7e-239 832.8 606 72.4
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.7e-239 832.8 594 75.4
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.8e-239 832.0 601 72.2
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.3e-239 830.9 602 70.9
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 7.0e-238 827.4 595 74.1
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.9e-236 822.0 593 71.3
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.6e-236 820.8 587 71.6
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.1e-235 820.1 593 71.3
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.9e-235 819.3 605 71.7
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 4.2e-235 818.1 615 69.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 7.0e-230 800.8 592 69.8
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 2.9e-228 795.4 609 67.8
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 9.5e-227 790.4 592 69.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 3.6e-226 788.5 596 68.8
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 5.8e-224 781.2 593 68.8
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 7.5e-224 780.8 593 68.6
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.2e-223 779.2 604 66.7
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 8.3e-223 777.3 592 68.4
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 5.4e-222 774.6 602 67.6
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 9.5e-219 763.8 545 70.8
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.2e-218 763.5 548 72.6
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.4e-216 755.4 609 66.2
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.9e-215 752.3 644 63.2
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.4e-215 751.1 609 64.7
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-214 750.4 600 67.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.4e-214 749.2 608 65.5
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.9e-208 727.2 602 65.3
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.2e-207 726.1 614 61.4
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 5.1e-204 714.9 597 64.2
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 6.4e-199 698.0 593 63.7
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.9e-191 672.5 567 64.0
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-180 637.1 473 69.1
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.6e-173 613.6 517 65.4
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.1e-170 603.2 441 72.1
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.5e-165 585.9 598 57.5
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.4e-156 557.4 605 52.2
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 4.2e-150 535.8 596 50.0
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 3.0e-148 529.6 598 51.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.7e-128 463.4 616 44.0
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.3e-127 461.1 601 48.9
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.3e-119 433.7 590 43.9
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 6.0e-96 355.9 209 83.7
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.4e-91 340.1 243 71.2
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.6e-75 287.3 324 50.9
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 7.6e-75 285.8 627 34.6
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 7.9e-72 275.8 238 64.7
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.2e-66 257.7 269 56.5
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.3e-61 241.9 582 32.3
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 1.9e-49 201.4 139 71.9
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 8.5e-42 176.0 151 62.9
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 8.8e-31 139.4 98 69.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.8e-29 133.7 201 42.8
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.1e-25 122.5 625 22.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 3.6e-24 117.5 212 47.6
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.3e-23 114.8 79 72.2
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 1.5e-22 112.1 78 67.9
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 2.0e-22 111.7 78 67.9
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.4e-15 89.0 115 40.0
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.5e-14 85.5 90 46.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.0e-12 76.6 59 66.1
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 5.9e-11 73.6 93 44.1
CAN.G186.63 Capsicum annuum HOM05D004853 ORTHO05D005865 1.5e-06 58.9 48 66.7


User provided reference genes

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