Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037757.1 Olea europaea HOM05D004866 ORTHO05D005716 7.1e-142 507.3 264 100.0
Dinv15070 Davidia involucrata HOM05D004866 ORTHO05D005716 1.7e-98 363.2 264 66.3
MSTRG.1528 Avicennia marina HOM05D004866 ORTHO05D005716 1.8e-97 359.8 264 72.7
SalBow7G0145 Salvia bowleyana HOM05D004866 ORTHO05D005716 1.8e-97 359.8 263 69.2
Lj7C291G3 Lonicera japonica HOM05D004866 ORTHO05D005716 4.1e-97 358.6 264 68.6
Migut.C01261 Erythranthe guttata HOM05D004866 ORTHO05D005716 2.5e-94 349.4 244 70.9
MSTRG.22459 Avicennia marina HOM05D004866 ORTHO05D005716 4.2e-94 348.6 265 67.2
Actinidia02574 Actinidia chinensis HOM05D004866 ORTHO05D005716 9.4e-94 347.4 264 63.3
CSS0004253 Camellia sinensis var. sinensis HOM05D004866 ORTHO05D005716 1.4e-92 343.6 264 62.9
SGA_v2.0_scaffold118G32495 Striga asiatica HOM05D004866 ORTHO05D005716 3.4e-91 339.0 264 64.4
Haze_22514 Corylus avellana HOM05D004866 ORTHO05D005716 9.8e-91 337.4 264 62.5
Cc01_g05780 Coffea canephora HOM05D004866 ORTHO05D005716 1.3e-90 337.0 264 64.4
Rhsim11G0058000 Rhododendron simsii HOM05D004866 ORTHO05D005716 1.3e-90 337.0 264 62.9
Rhsim11G0058200 Rhododendron simsii HOM05D004866 ORTHO05D005716 1.3e-90 337.0 264 62.9
Cfa013842 Carpinus fangiana HOM05D004866 ORTHO05D005716 3.7e-90 335.5 264 62.5
Oeu021211.1 Olea europaea HOM05D004866 ORTHO05D005716 4.8e-90 335.1 264 65.5
Nitab4.5_0006657g0010 Nicotiana tabacum HOM05D004866 ORTHO05D005716 1.1e-89 334.0 262 60.7
CAN.G199.2 Capsicum annuum HOM05D004866 ORTHO05D005716 4.1e-89 332.0 262 59.9
Nitab4.5_0000303g0220 Nicotiana tabacum HOM05D004866 ORTHO05D005716 9.1e-89 330.9 262 60.3
Sopen06g023810 Solanum pennellii HOM05D004866 ORTHO05D005716 5.9e-88 328.2 262 59.5
Peaxi162Scf00268g01017 Petunia axillaris HOM05D004866 ORTHO05D005716 1.3e-87 327.0 263 60.1
SGA_v2.0_scaffold24G10559 Striga asiatica HOM05D004866 ORTHO05D005716 1.5e-86 323.6 254 68.5
Nitab4.5_0000167g0040 Nicotiana tabacum HOM05D004866 ORTHO05D005716 2.5e-86 322.8 263 62.0
CiPaw.08G058600 Carya illinoinensis HOM05D004866 ORTHO05D005716 4.2e-86 322.0 265 60.4
TAR628G0891 Trochodendron aralioides HOM05D004866 ORTHO05D005716 1.4e-84 317.0 268 58.2
Peaxi162Scf01013g00127 Petunia axillaris HOM05D004866 ORTHO05D005716 6.8e-84 314.7 262 62.6
CAN.G2.14 Capsicum annuum HOM05D004866 ORTHO05D005716 2.6e-83 312.8 264 59.5
PGR042G1785 Punica granatum HOM05D004866 ORTHO05D005716 2.6e-83 312.8 265 58.1
Thecc.08G185100 Theobroma cacao HOM05D004866 ORTHO05D005716 2.6e-83 312.8 264 57.2
Nitab4.5_0001579g0120 Nicotiana tabacum HOM05D004866 ORTHO05D005716 3.4e-83 312.4 262 59.9
Potri.013G111400 Populus trichocarpa HOM05D004866 ORTHO05D005716 4.4e-83 312.0 264 59.1
Migut.N03354 Erythranthe guttata HOM05D004866 ORTHO05D005716 5.7e-83 311.6 255 61.6
Sopen11g010040 Solanum pennellii HOM05D004866 ORTHO05D005716 9.8e-83 310.8 266 60.2
Solyc11g019920.2 Solanum lycopersicum HOM05D004866 ORTHO05D005716 1.7e-82 310.1 266 60.2
CiPaw.07G160700 Carya illinoinensis HOM05D004866 ORTHO05D005716 2.2e-82 309.7 254 58.7
Thecc.08G184800 Theobroma cacao HOM05D004866 ORTHO05D005716 2.8e-82 309.3 257 58.4
Ciclev10001144m.g Citrus clementina HOM05D004866 ORTHO05D005716 4.9e-82 308.5 265 58.1
TAR624G1235 Trochodendron aralioides HOM05D004866 ORTHO05D005716 6.3e-82 308.1 267 56.9
PGSC0003DMG400027609 Solanum tuberosum HOM05D004866 ORTHO05D005716 8.3e-82 307.8 266 60.5
unitig_0.g2131 Utricularia gibba HOM05D004866 ORTHO05D005716 1.1e-81 307.4 267 63.7
PGSC0003DMG400026074 Solanum tuberosum HOM05D004866 ORTHO05D005716 5.4e-81 305.1 309 50.5
Manes.02G192700 Manihot esculenta HOM05D004866 ORTHO05D005716 1.2e-80 303.9 264 60.2
CANSAT25G2412 Cannabis sativa HOM05D004866 ORTHO05D005716 1.6e-80 303.5 266 56.4
FAN04G1244 Fragaria x ananassa HOM05D004866 ORTHO05D005716 1.6e-80 303.5 265 57.4
Duzib211G0502 Durio zibethinus HOM05D004866 ORTHO05D005716 2.0e-80 303.1 259 56.4
MD15G1411400 Malus domestica HOM05D004866 ORTHO05D005716 3.5e-80 302.4 265 56.6
Sabra19G0093900 Salix brachista HOM05D004866 ORTHO05D005716 3.5e-80 302.4 264 56.1
DCAR_001057 Daucus carota HOM05D004866 ORTHO05D005716 4.5e-80 302.0 364 48.4
FvH4_5g30970 Fragaria vesca HOM05D004866 ORTHO05D005716 4.5e-80 302.0 265 57.4
FAN08G2315 Fragaria x ananassa HOM05D004866 ORTHO05D005716 4.5e-80 302.0 265 57.0
FAN04G1967 Fragaria x ananassa HOM05D004866 ORTHO05D005716 1.0e-79 300.8 265 57.0
Potri.019G082400 Populus trichocarpa HOM05D004866 ORTHO05D005716 1.0e-79 300.8 264 56.1
Atru.chr13.1733 Acer truncatum HOM05D004866 ORTHO05D005716 1.3e-79 300.4 244 61.1
FAN13G0537 Fragaria x ananassa HOM05D004866 ORTHO05D005716 1.3e-79 300.4 265 57.0
FAN18G3952 Fragaria x ananassa HOM05D004866 ORTHO05D005716 1.3e-79 300.4 265 57.0
TWI60G1141 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 1.7e-79 300.1 265 57.0
Eucgr.C02238 Eucalyptus grandis HOM05D004866 ORTHO05D005716 2.9e-79 299.3 264 56.4
Gorai.006G130600 Gossypium raimondii HOM05D004866 ORTHO05D005716 3.8e-79 298.9 261 55.2
RcHm_v2.0_Chr7g0226321 Rosa chinensis HOM05D004866 ORTHO05D005716 1.1e-78 297.4 265 57.0
Gohir.D09G113100 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.9e-78 296.6 261 55.2
Gohir.A09G116000 Gossypium hirsutum HOM05D004866 ORTHO05D005716 4.3e-78 295.4 261 54.8
Prupe.1G557400 Prunus persica HOM05D004866 ORTHO05D005716 4.3e-78 295.4 265 55.5
MD08G1220700 Malus domestica HOM05D004866 ORTHO05D005716 1.6e-77 293.5 265 53.6
MD09G1249700 Malus domestica HOM05D004866 ORTHO05D005716 1.6e-77 293.5 265 53.6
TWI34G1187 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 1.6e-77 293.5 265 56.2
Ah.05g178220 Amaranthus hybridus HOM05D004866 ORTHO05D005716 3.6e-77 292.4 264 53.8
SalBow1G5438 Salvia bowleyana HOM05D004866 ORTHO05D005716 1.0e-76 290.8 255 56.5
EL10Ac1g00092 Beta vulgaris HOM05D004866 ORTHO05D005716 1.4e-76 290.4 264 53.0
ECA247G2093 Erigeron canadensis HOM05D004866 ORTHO05D005716 1.4e-76 290.4 263 57.4
PSO017G5284 Papaver somniferum HOM05D004866 ORTHO05D005716 2.3e-76 289.7 269 53.5
AUR62022699 Chenopodium quinoa HOM05D004866 ORTHO05D005716 8.9e-76 287.7 264 52.7
AUR62004637 Chenopodium quinoa HOM05D004866 ORTHO05D005716 1.2e-75 287.3 264 52.7
Duzib211G0074 Durio zibethinus HOM05D004866 ORTHO05D005716 1.2e-75 287.3 215 61.9
Lsat_1_v5_gn_1_12401 Lactuca sativa HOM05D004866 ORTHO05D005716 1.5e-75 287.0 263 55.9
MBI09_g41429_MAGBIO Magnolia biondii HOM05D004866 ORTHO05D005716 2.0e-75 286.6 265 55.5
SalBow6G2673 Salvia bowleyana HOM05D004866 ORTHO05D005716 3.4e-75 285.8 255 57.3
HanXRQChr02g0044281 Helianthus annuus HOM05D004866 ORTHO05D005716 9.8e-75 284.3 263 56.3
CDE04G2694 Ceratophyllum demersum HOM05D004866 ORTHO05D005716 1.4e-73 280.4 215 61.4
Aqoxy5G02452 Aquilegia oxysepala HOM05D004866 ORTHO05D005716 9.2e-73 277.7 215 59.5
Lalb_Chr06g0161961 Lupinus albus HOM05D004866 ORTHO05D005716 1.2e-72 277.3 265 51.7
ATR0752G218 Amborella trichopoda HOM05D004866 ORTHO05D005716 2.0e-72 276.6 216 59.3
Gohir.D05G276400 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.3e-71 273.9 250 56.4
GSVIVG01034781001 Vitis vinifera HOM05D004866 ORTHO05D005716 1.7e-71 273.5 198 63.1
ClCG11G008070 Citrullus lanatus HOM05D004866 ORTHO05D005716 2.3e-71 273.1 268 54.1
THA.LOC104816334 Tarenaya hassleriana HOM05D004866 ORTHO05D005716 3.0e-71 272.7 271 52.4
Gorai.009G289400 Gossypium raimondii HOM05D004866 ORTHO05D005716 1.1e-70 270.8 250 55.6
Os04g0432500 Oryza sativa ssp. japonica HOM05D004866 ORTHO05D005716 1.1e-70 270.8 215 58.6
Carub.0001s3321 Capsella rubella HOM05D004866 ORTHO05D005716 3.3e-70 269.2 272 51.5
BcaB03g13658 Brassica carinata HOM05D004866 ORTHO05D005716 4.3e-70 268.9 265 52.8
MELO3C008127.2 Cucumis melo HOM05D004866 ORTHO05D005716 4.3e-70 268.9 269 51.3
CsaV3_2G033540 Cucumis sativus L. HOM05D004866 ORTHO05D005716 4.3e-70 268.9 268 53.0
Gorai.009G263700 Gossypium raimondii HOM05D004866 ORTHO05D005716 4.3e-70 268.9 216 59.7
Lj5g0015319 Lotus japonicus HOM05D004866 ORTHO05D005716 4.3e-70 268.9 265 49.1
SHI09019 Sapria himalayana HOM05D004866 ORTHO05D005716 9.5e-70 267.7 217 57.1
Gohir.D05G253300 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.6e-69 266.9 216 59.7
AT1G35620 Arabidopsis thaliana HOM05D004866 ORTHO05D005716 2.1e-69 266.5 269 51.3
Hund16793 Selenicereus undatus HOM05D004866 ORTHO05D005716 2.8e-69 266.2 251 53.8
A05p23590 Brassica napus HOM05D004866 ORTHO05D005716 3.6e-69 265.8 265 52.1
BolC5t32456H Brassica oleracea HOM05D004866 ORTHO05D005716 3.6e-69 265.8 265 52.1
BraA05t21227Z Brassica rapa HOM05D004866 ORTHO05D005716 3.6e-69 265.8 265 52.1
Thhalv10010385m.g Eutrema salsugineum HOM05D004866 ORTHO05D005716 3.6e-69 265.8 269 51.7
BcaC05g27723 Brassica carinata HOM05D004866 ORTHO05D005716 4.7e-69 265.4 265 52.1
C05p37040 Brassica napus HOM05D004866 ORTHO05D005716 4.7e-69 265.4 265 52.1
Sp1g30340 Schrenkiella parvula HOM05D004866 ORTHO05D005716 4.7e-69 265.4 265 51.7
Lalb_Chr02g0141731 Lupinus albus HOM05D004866 ORTHO05D005716 1.4e-68 263.8 264 49.6
Sed0013291 Sechium edule HOM05D004866 ORTHO05D005716 4.0e-68 262.3 269 52.0
Zm00001eb082680 Zea mays HOM05D004866 ORTHO05D005716 6.8e-68 261.5 215 57.7
CARHR034420 Cardamine hirsuta HOM05D004866 ORTHO05D005716 1.5e-67 260.4 274 51.5
HPP92_019370 Vanilla planifolia HOM05D004866 ORTHO05D005716 2.0e-67 260.0 209 59.3
Aa31LG6G8820 Aethionema arabicum HOM05D004866 ORTHO05D005716 2.6e-67 259.6 269 51.3
HanXRQChr04g0109621 Helianthus annuus HOM05D004866 ORTHO05D005716 3.4e-67 259.2 261 52.9
Phvul.007G088500 Phaseolus vulgaris HOM05D004866 ORTHO05D005716 1.3e-66 257.3 264 49.2
COL.COLO4_23639 Corchorus olitorius HOM05D004866 ORTHO05D005716 3.7e-66 255.8 269 51.7
VMungo0720G1828 Vigna mungo HOM05D004866 ORTHO05D005716 1.1e-65 254.2 266 48.5
Glyma.10G217600 Glycine max HOM05D004866 ORTHO05D005716 1.4e-65 253.8 266 48.1
Medtr1g096790 Medicago truncatula HOM05D004866 ORTHO05D005716 1.4e-65 253.8 268 48.1
Solyc06g065320.4 Solanum lycopersicum HOM05D004866 ORTHO05D005716 3.2e-65 252.7 173 67.1
COL.COLO4_38510 Corchorus olitorius HOM05D004866 ORTHO05D005716 2.0e-64 250.0 341 41.3
Zm00001eb243460 Zea mays HOM05D004866 ORTHO05D005716 2.0e-64 250.0 200 59.5
arahy.Tifrunner.gnm1.ann1.YL670A Arachis hypogaea HOM05D004866 ORTHO05D005716 2.7e-64 249.6 267 47.2
vmacro12483 Vaccinium macrocarpon HOM05D004866 ORTHO05D005716 2.7e-64 249.6 159 73.6
arahy.Tifrunner.gnm1.ann1.AKH03T Arachis hypogaea HOM05D004866 ORTHO05D005716 3.5e-64 249.2 267 47.2
Rhsim06G0094600 Rhododendron simsii HOM05D004866 ORTHO05D005716 4.6e-64 248.8 210 61.4
TPR.G15688 Trifolium pratense HOM05D004866 ORTHO05D005716 6.0e-64 248.4 267 46.4
Os02g0550300 Oryza sativa ssp. japonica HOM05D004866 ORTHO05D005716 6.6e-63 245.0 201 60.2
Dinv41717 Davidia involucrata HOM05D004866 ORTHO05D005716 8.6e-63 244.6 159 71.1
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 1.5e-62 243.8 191 57.1
CDE02G1426 Ceratophyllum demersum HOM05D000012 ORTHO05D000540 1.2e-61 240.7 200 55.5
Lalb_Chr03g0036111 Lupinus albus HOM05D004866 ORTHO05D005716 2.3e-60 236.5 281 46.3
Hma1.2p1_0251F.1_g102520 Hydrangea macrophylla HOM05D004866 ORTHO05D005716 2.0e-59 233.4 159 69.2
Nn1g08376 Nelumbo nucifera HOM05D004866 ORTHO05D005716 1.9e-57 226.9 159 67.9
Sc01g0001820 Simmondsia chinensis HOM05D004866 ORTHO05D005716 1.0e-55 221.1 158 63.9
Gohir.A05G274200 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.3e-55 220.7 172 59.9
Cpa.g.sc66.30 Carica papaya HOM05D004866 ORTHO05D005716 1.7e-55 220.3 156 63.5
Zm00001eb422640 Zea mays HOM05D004866 ORTHO05D005716 1.7e-55 220.3 159 61.6
QL02p033402 Quercus lobata HOM05D004866 ORTHO05D005716 3.0e-55 219.5 213 52.1
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 1.5e-54 217.2 191 58.1
Aa31LG9G14850 Aethionema arabicum HOM05D004866 ORTHO05D005716 1.4e-52 210.7 192 54.7
CDE07G1470 Ceratophyllum demersum HOM05D004866 ORTHO05D005716 8.9e-44 181.4 167 55.1
Oeu032986.1 Olea europaea HOM05D007524 ORTHO05D009475 2.0e-43 180.3 138 72.5
Mapoly0010s0028 Marchantia polymorpha HOM05D004866 ORTHO05D005716 3.9e-39 166.0 198 40.9
Gohir.A05G250501 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.1e-36 157.9 143 55.9
RcHm_v2.0_Chr7g0226361 Rosa chinensis HOM05D004866 ORTHO05D005716 1.2e-32 144.4 100 65.0
Pp3c4_15240 Physcomitrium patens HOM05D004866 ORTHO05D005716 1.2e-27 127.9 183 36.6
Pp3c3_31600 Physcomitrium patens HOM05D004866 ORTHO05D005716 4.6e-24 115.9 199 32.7
CDE07G0979 Ceratophyllum demersum HOM05D004866 ORTHO05D005716 6.2e-21 105.5 70 65.7
vmacro12484 Vaccinium macrocarpon HOM05D004866 ORTHO05D005716 2.4e-20 103.6 107 53.3
SGA_v2.0_scaffold118G32519 Striga asiatica HOM05D004866 ORTHO05D005716 1.0e-18 98.2 122 48.4
Cpa.g.sc66.31 Carica papaya HOM05D004866 ORTHO05D005716 3.0e-15 86.7 109 46.8
Rhsim06G0094700 Rhododendron simsii HOM05D004866 ORTHO05D005716 1.1e-12 78.2 46 73.9
Gohir.A05G250450 Gossypium hirsutum HOM05D004866 ORTHO05D005716 5.9e-11 72.4 51 60.8
Sed0018546 Sechium edule HOM05D004866 ORTHO05D005716 3.8e-10 69.7 109 41.3


User provided reference genes

Program Settings