Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037631.1 Olea europaea HOM05D002272 ORTHO05D005405 9.3e-74 280.0 133 100.0
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 3.7e-46 188.3 126 73.8
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 1.1e-45 186.8 126 75.4
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 1.1e-45 186.8 126 73.8
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 1.4e-45 186.4 126 73.0
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 2.4e-45 185.7 126 73.0
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 5.3e-45 184.5 126 73.0
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 1.5e-44 183.0 126 73.8
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 7.7e-44 180.6 126 72.2
Solyc03g117320.4 Solanum lycopersicum HOM05D002272 ORTHO05D005405 7.7e-44 180.6 124 74.2
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 7.7e-44 180.6 124 74.2
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 7.7e-44 180.6 124 74.2
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 1.3e-43 179.9 126 72.2
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 1.7e-43 179.5 126 72.2
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 2.9e-43 178.7 126 70.6
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 3.8e-43 178.3 126 70.6
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 3.8e-43 178.3 126 69.8
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 5.0e-43 177.9 126 71.4
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 5.0e-43 177.9 126 72.2
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 6.5e-43 177.6 126 71.4
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 8.5e-43 177.2 126 72.2
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 1.1e-42 176.8 129 69.0
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 1.4e-42 176.4 126 72.2
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 2.5e-42 175.6 126 70.6
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 3.2e-42 175.3 126 69.0
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 3.2e-42 175.3 126 71.4
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 5.5e-42 174.5 126 71.4
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 5.5e-42 174.5 126 70.6
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 7.2e-42 174.1 126 69.8
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 9.4e-42 173.7 126 69.8
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 1.2e-41 173.3 126 68.3
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 1.6e-41 172.9 126 69.8
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 2.1e-41 172.6 129 67.4
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 2.7e-41 172.2 129 68.2
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 3.6e-41 171.8 126 69.0
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 4.7e-41 171.4 126 68.3
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 1.4e-40 169.9 126 69.8
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 2.3e-40 169.1 126 69.0
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 2.3e-40 169.1 124 71.8
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 2.3e-40 169.1 124 71.8
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 2.3e-40 169.1 126 69.8
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 3.9e-40 168.3 122 70.5
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 5.2e-40 167.9 126 67.5
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 6.7e-40 167.5 126 65.9
Sopen01g021790 Solanum pennellii HOM05D002272 ORTHO05D005405 6.7e-40 167.5 133 67.7
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 1.1e-39 166.8 131 66.4
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 1.5e-39 166.4 126 69.0
Psat1g056160 Pisum sativum HOM05D002272 ORTHO05D005405 1.5e-39 166.4 124 66.1
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 1.5e-39 166.4 126 66.7
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 2.0e-39 166.0 129 67.4
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 2.0e-39 166.0 126 68.3
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 2.0e-39 166.0 126 69.8
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 3.3e-39 165.2 126 66.7
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 4.4e-39 164.9 129 66.7
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 7.4e-39 164.1 129 65.1
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 1.3e-38 163.3 126 65.9
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 2.2e-38 162.5 127 67.7
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 2.8e-38 162.2 126 65.9
Rhsim04G0248300 Rhododendron simsii HOM05D002272 ORTHO05D005405 2.8e-38 162.2 124 66.9
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 3.7e-38 161.8 124 67.7
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 3.7e-38 161.8 124 64.5
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 3.7e-38 161.8 124 64.5
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 3.7e-38 161.8 124 64.5
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 3.7e-38 161.8 124 64.5
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 6.3e-38 161.0 129 63.6
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 6.3e-38 161.0 126 66.7
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 1.1e-37 160.2 126 65.9
Glyma.13G276300 Glycine max HOM05D002272 ORTHO05D005405 1.1e-37 160.2 126 65.9
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 1.4e-37 159.8 126 66.7
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 1.8e-37 159.5 129 63.6
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 2.4e-37 159.1 126 67.5
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 4.1e-37 158.3 129 63.6
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 4.1e-37 158.3 126 65.1
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 4.1e-37 158.3 126 65.9
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 9.1e-37 157.1 126 61.9
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 1.2e-36 156.8 129 62.8
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 1.2e-36 156.8 129 62.8
Haze_00766 Corylus avellana HOM05D002272 ORTHO05D005405 1.6e-36 156.4 135 61.5
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 2.0e-36 156.0 126 64.3
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 2.0e-36 156.0 121 66.9
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 2.6e-36 155.6 112 71.4
Cfa015730 Carpinus fangiana HOM05D002272 ORTHO05D005405 3.5e-36 155.2 131 62.6
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 4.5e-36 154.8 129 62.8
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 4.5e-36 154.8 129 62.8
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 4.5e-36 154.8 129 62.8
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 5.9e-36 154.5 129 61.2
PGR004G1245 Punica granatum HOM05D002272 ORTHO05D005405 5.9e-36 154.5 127 62.2
Glyma.12G225000 Glycine max HOM05D002272 ORTHO05D005405 7.7e-36 154.1 116 67.2
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 1.0e-35 153.7 126 63.5
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 1.3e-35 153.3 126 63.5
vmacro08012 Vaccinium macrocarpon HOM05D002272 ORTHO05D005405 1.3e-35 153.3 124 65.3
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 1.7e-35 152.9 126 61.1
Lalb_Chr04g0247221 Lupinus albus HOM05D002272 ORTHO05D005405 1.7e-35 152.9 111 70.3
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 2.2e-35 152.5 126 61.1
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 2.2e-35 152.5 126 61.1
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 2.9e-35 152.1 130 62.3
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 2.9e-35 152.1 130 62.3
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 6.5e-35 151.0 126 61.9
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 1.1e-34 150.2 129 61.2
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 1.1e-34 150.2 129 61.2
PSO761G0243 Papaver somniferum HOM05D002272 ORTHO05D005405 1.9e-34 149.4 126 62.7
Oeu012217.1 Olea europaea HOM05D002272 ORTHO05D005405 4.2e-34 148.3 78 88.5
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 5.5e-34 147.9 126 55.6
Aqoxy5G02803 Aquilegia oxysepala HOM05D002272 ORTHO05D005405 7.2e-34 147.5 126 62.7
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 7.2e-34 147.5 126 63.5
TWI75G1791 Tripterygium wilfordii HOM05D002272 ORTHO05D005405 9.4e-34 147.1 126 59.5
CiPaw.02G069200 Carya illinoinensis HOM05D002272 ORTHO05D005405 1.2e-33 146.7 126 61.1
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 1.2e-33 146.7 126 62.7
Sabra10G0001800 Salix brachista HOM05D002272 ORTHO05D005405 1.6e-33 146.4 126 62.7
PSO541G1920 Papaver somniferum HOM05D002272 ORTHO05D005405 2.1e-33 146.0 124 62.1
VMungo1080G0714 Vigna mungo HOM05D002272 ORTHO05D005405 2.1e-33 146.0 111 67.6
CDE12G0965 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 2.7e-33 145.6 126 60.3
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 4.7e-33 144.8 133 56.4
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 1.0e-32 143.7 124 60.5
Hund04488 Selenicereus undatus HOM05D002272 ORTHO05D005405 1.0e-32 143.7 119 63.0
Sed0025255 Sechium edule HOM05D002272 ORTHO05D005405 1.4e-32 143.3 112 66.1
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 3.0e-32 142.1 78 84.6
TPR.G2257 Trifolium pratense HOM05D002272 ORTHO05D005405 3.0e-32 142.1 124 59.7
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 4.0e-32 141.7 126 60.3
TPR.G18850 Trifolium pratense HOM05D002272 ORTHO05D005405 1.5e-31 139.8 133 54.9
CsaV3_3G015540 Cucumis sativus L. HOM05D002272 ORTHO05D005405 2.0e-31 139.4 127 60.6
Medtr2g090370 Medicago truncatula HOM05D002272 ORTHO05D005405 3.7e-30 135.2 77 77.9
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 4.8e-30 134.8 126 54.8
MELO3C006752.2 Cucumis melo HOM05D002272 ORTHO05D005405 1.1e-29 133.7 127 57.5
CDE01G0715 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 2.4e-29 132.5 77 77.9
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 2.4e-29 132.5 126 54.0
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 1.5e-26 123.2 124 54.8
SEGI_24146 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 1.0e-24 117.1 77 67.5
C03p48850 Brassica napus HOM05D002272 ORTHO05D005405 6.3e-22 107.8 127 48.0
BcaC09g48707 Brassica carinata HOM05D002272 ORTHO05D005405 1.6e-20 103.2 68 69.1
CBR_g27892 Chara braunii HOM05D002272 ORTHO05D005405 1.6e-20 103.2 120 48.3
Cre01.g022250 Chlamydomonas reinhardtii HOM05D002272 ORTHO05D005405 2.3e-19 99.4 113 47.8
arahy.Tifrunner.gnm1.ann1.IDQN4N Arachis hypogaea HOM05D002272 ORTHO05D005405 1.9e-18 96.3 75 72.0
BcaNung06481 Brassica carinata HOM05D002272 ORTHO05D005405 2.5e-18 95.9 63 68.3
Gohir.A02G058500 Gossypium hirsutum HOM05D002272 ORTHO05D005405 2.5e-18 95.9 74 68.9
Sabra08G0150200 Salix brachista HOM05D002272 ORTHO05D005405 4.2e-18 95.1 57 78.9
arahy.Tifrunner.gnm1.ann1.VQU8DB Arachis hypogaea HOM05D002272 ORTHO05D005405 1.2e-17 93.6 71 70.4
BcaC01g03762 Brassica carinata HOM05D002272 ORTHO05D005405 8.9e-16 87.4 82 54.9
PGSC0003DMG402013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 1.7e-14 83.2 53 71.7
Nitab4.5_0006648g0050 Nicotiana tabacum HOM05D002272 ORTHO05D005405 2.8e-14 82.4 64 71.9
Zm00001eb333790 Zea mays HOM05D002272 ORTHO05D005405 3.7e-14 82.0 75 60.0
C03p48820 Brassica napus HOM05D002272 ORTHO05D005405 6.3e-14 81.3 56 67.9
BolC3t17164H Brassica oleracea HOM05D002272 ORTHO05D005405 6.3e-14 81.3 56 67.9
MCO04G432 Micromonas commoda HOM05D002272 ORTHO05D005405 6.3e-14 81.3 99 44.4
BolC1t04644H Brassica oleracea HOM05D002272 ORTHO05D040789 1.8e-13 79.7 52 67.3
C01p46730 Brassica napus HOM05D002272 ORTHO05D040789 2.3e-11 72.8 53 64.2
PRCOL_00001976 Prasinoderma coloniale HOM05D002272 ORTHO05D005405 1.8e-08 63.2 112 38.4
Solyc01g057250.2 Solanum lycopersicum HOM05D002272 ORTHO05D005405 4.0e-08 62.0 33 87.9


User provided reference genes

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