Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.2e-166 589.7 299 100.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 7.0e-61 238.4 300 50.0
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.7e-59 233.8 308 49.0
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.9e-59 233.0 299 47.8
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 8.5e-59 231.5 275 51.6
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 8.5e-59 231.5 301 47.8
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 8.5e-59 231.5 301 47.8
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.1e-58 231.1 301 47.2
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 3.2e-58 229.6 300 47.7
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 3.2e-58 229.6 301 47.5
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 7.2e-58 228.4 299 45.5
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.6e-57 227.3 299 45.8
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.7e-57 226.5 299 45.8
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 6.1e-57 225.3 300 46.7
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 8.0e-57 224.9 299 46.8
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.4e-56 224.2 302 46.4
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.3e-56 223.4 288 45.8
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.0e-56 223.0 299 47.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 3.0e-56 223.0 301 47.2
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 4.0e-56 222.6 289 47.8
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 5.2e-56 222.2 299 46.5
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 6.8e-56 221.9 297 47.8
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 8.8e-56 221.5 300 46.7
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.2e-55 221.1 299 45.5
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.5e-55 220.7 298 47.0
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 2.6e-55 219.9 297 47.5
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.7e-55 218.8 300 46.3
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 7.5e-55 218.4 292 44.9
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 7.5e-55 218.4 299 44.1
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 9.8e-55 218.0 298 46.3
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 9.8e-55 218.0 289 45.7
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.3e-54 217.6 289 46.0
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.3e-54 217.6 292 44.2
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 2.2e-54 216.9 299 46.5
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.8e-54 216.5 289 45.7
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.8e-54 216.5 295 46.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 3.7e-54 216.1 299 44.5
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.7e-54 216.1 302 46.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.8e-54 215.7 299 46.2
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 6.3e-54 215.3 289 45.0
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.1e-53 214.5 299 46.5
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.1e-53 214.5 299 45.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.4e-53 214.2 280 45.0
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.8e-53 213.8 299 44.1
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.8e-53 213.8 283 44.9
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.1e-53 212.6 297 43.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 4.1e-53 212.6 301 45.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 5.4e-53 212.2 292 44.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 7.0e-53 211.8 299 43.8
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 7.0e-53 211.8 300 45.3
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 7.0e-53 211.8 297 45.8
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 9.1e-53 211.5 299 43.5
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.2e-52 211.1 308 43.2
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.6e-52 210.7 297 43.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.0e-52 210.3 292 43.8
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.7e-52 209.9 312 43.9
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 7.7e-52 208.4 299 43.1
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.0e-51 208.0 305 44.6
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 1.0e-51 208.0 305 44.3
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.7e-51 207.2 292 45.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.3e-51 206.8 293 45.4
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.9e-51 206.5 299 44.1
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.9e-51 206.5 297 42.1
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.0e-51 205.7 291 44.3
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 5.0e-51 205.7 288 45.1
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 6.6e-51 205.3 301 43.5
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 8.6e-51 204.9 301 44.2
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 8.6e-51 204.9 301 43.9
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.1e-50 204.5 294 43.9
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 2.5e-50 203.4 283 44.2
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.3e-50 203.0 305 43.6
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 4.2e-50 202.6 292 42.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.5e-50 202.2 297 41.4
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 9.5e-50 201.4 301 43.9
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 9.5e-50 201.4 295 43.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.6e-49 200.7 299 43.8
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 2.1e-49 200.3 301 42.9
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.8e-49 199.9 301 42.9
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.8e-48 197.2 315 42.9
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.8e-48 197.2 312 41.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.5e-47 194.1 297 40.4
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 3.4e-47 193.0 299 41.8
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 8.3e-46 188.3 291 41.6
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 4.1e-45 186.0 299 41.5
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.4e-45 185.7 299 41.1
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 7.0e-45 185.3 299 41.5
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.6e-44 184.1 296 39.2
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 5.9e-44 182.2 301 41.5
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.3e-43 181.0 299 42.1
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 2.9e-43 179.9 295 41.4
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.6e-43 178.3 286 39.9
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.9e-42 177.2 299 40.1
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.5e-42 176.8 286 39.9
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 7.3e-42 175.3 298 37.2
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.2e-41 174.5 266 41.4
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.6e-41 174.1 288 39.9
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 3.6e-41 172.9 289 39.4
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.7e-41 172.6 262 42.4
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 4.7e-41 172.6 300 39.7
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 6.1e-41 172.2 289 38.8
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 6.1e-41 172.2 289 39.4
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.0e-41 171.8 287 39.7
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.0e-40 171.4 289 38.8
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 2.3e-40 170.2 288 37.8
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 3.1e-40 169.9 285 39.3
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 5.2e-40 169.1 291 37.8
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 3.7e-38 162.9 298 36.9
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.2e-36 157.9 291 36.4
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.6e-36 157.5 300 37.7
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 2.0e-36 157.1 291 36.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 2.0e-36 157.1 291 36.4
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.5e-36 156.4 291 36.1
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.5e-36 156.4 284 37.7
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.6e-36 156.0 293 36.9
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-34 151.0 292 36.6
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.5e-34 151.0 259 39.4
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.2e-33 147.9 291 35.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.1e-32 144.8 299 36.5
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.1e-32 143.3 290 35.9
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.2e-31 141.4 301 34.2
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.0e-31 140.6 268 37.3
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.0e-31 140.6 268 37.3
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 4.9e-30 136.0 103 68.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 4.9e-30 136.0 277 36.1
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 8.3e-30 135.2 300 33.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.4e-29 133.7 107 66.4
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 2.7e-28 130.2 279 32.6
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.0e-27 128.3 92 69.6
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.0e-27 128.3 225 35.6
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.1e-26 124.8 288 33.3
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.5e-26 123.6 264 32.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 3.6e-25 119.8 106 59.4
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 5.2e-24 115.9 97 57.7
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.8e-23 112.5 97 60.8
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.5e-23 112.1 97 61.9
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 8.3e-22 108.6 87 64.4
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.4e-21 105.9 105 61.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 9.2e-21 105.1 254 29.1
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.8e-17 93.6 88 51.1
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 4.0e-16 89.7 98 43.9
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.6e-15 87.0 253 27.7
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 5.8e-15 85.9 93 50.5
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 5.8e-15 85.9 70 64.3
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 9.9e-15 85.1 65 66.2
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.7e-14 84.3 71 60.6
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.2e-14 84.0 54 77.8
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 9.2e-13 78.6 91 49.5
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 9.2e-13 78.6 91 49.5
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 2.1e-12 77.4 65 63.1
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 3.0e-11 73.6 227 29.1
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 3.3e-10 70.1 66 62.1
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 9.0e-08 62.0 104 38.5
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 9.0e-08 62.0 62 53.2
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.5e-07 61.2 100 39.0
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 5.8e-07 59.3 45 55.6
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.8e-06 56.6 97 42.3


User provided reference genes

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