Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 3.1e-101 371.7 176 100.0
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 5.2e-72 274.6 173 74.0
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.3e-70 270.0 176 72.2
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 8.3e-70 267.3 177 71.2
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 9.1e-69 263.8 173 70.5
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 2.0e-68 262.7 204 60.3
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 3.8e-67 258.5 204 60.3
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 3.8e-67 258.5 202 61.4
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 8.6e-67 257.3 203 60.6
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 1.9e-66 256.1 173 67.6
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 2.5e-66 255.8 201 58.2
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 3.2e-66 255.4 204 59.8
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 5.5e-66 254.6 201 57.7
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.2e-65 253.4 204 59.3
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.2e-65 253.4 203 58.1
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 2.1e-65 252.7 204 58.8
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 4.7e-65 251.5 204 59.3
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 6.1e-65 251.1 202 58.4
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 8.0e-65 250.8 203 58.6
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 1.0e-64 250.4 199 61.3
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.0e-64 250.4 203 60.1
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.4e-64 250.0 203 59.6
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.4e-64 250.0 204 57.8
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.4e-64 250.0 204 59.8
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.4e-64 250.0 203 60.1
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 1.8e-64 249.6 203 58.6
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.8e-64 249.6 204 56.4
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 3.0e-64 248.8 202 58.4
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 4.0e-64 248.4 204 57.4
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 5.2e-64 248.1 203 58.1
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 6.8e-64 247.7 203 59.1
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 8.8e-64 247.3 203 58.1
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.2e-63 246.9 203 58.6
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.2e-63 246.9 203 58.6
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.5e-63 246.5 198 57.6
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 2.0e-63 246.1 198 58.1
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 2.6e-63 245.7 203 59.1
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 4.4e-63 245.0 203 58.1
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 4.4e-63 245.0 175 63.4
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 5.7e-63 244.6 203 58.1
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 7.5e-63 244.2 202 55.9
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 9.8e-63 243.8 203 59.1
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 1.3e-62 243.4 199 58.3
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 1.7e-62 243.0 198 59.1
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.7e-62 243.0 200 58.0
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 2.8e-62 242.3 199 59.3
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 6.3e-62 241.1 199 58.8
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 6.3e-62 241.1 203 57.6
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.1e-61 240.4 204 54.9
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.1e-61 240.4 204 54.9
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.4e-61 240.0 199 58.8
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 1.4e-61 240.0 201 58.7
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 3.1e-61 238.8 173 61.8
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 7.0e-61 237.7 204 57.4
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 9.2e-61 237.3 203 57.1
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.2e-60 236.9 202 54.5
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 2.0e-60 236.1 200 55.5
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 2.7e-60 235.7 204 54.4
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.5e-60 235.0 203 56.7
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 2.3e-59 232.6 173 61.3
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.3e-59 232.6 173 61.3
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.3e-59 232.6 173 61.3
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 1.9e-58 229.6 206 54.9
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 2.5e-58 229.2 210 54.3
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 2.5e-58 229.2 210 54.3
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.5e-58 229.2 208 53.8
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 4.3e-58 228.4 210 53.8
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.3e-58 228.4 175 58.3
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 9.5e-58 227.3 210 53.3
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 1.2e-57 226.9 211 52.1
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 1.2e-57 226.9 211 52.1
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.6e-57 226.5 208 53.4
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.8e-57 225.7 204 54.4
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 8.0e-57 224.2 190 59.5
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 8.0e-57 224.2 204 51.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.0e-56 223.8 211 51.7
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.0e-56 223.8 199 56.3
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.4e-56 223.4 208 54.8
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.3e-56 222.6 209 53.6
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 8.9e-56 220.7 201 53.7
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 8.9e-56 220.7 199 55.8
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 3.4e-55 218.8 208 53.4
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 3.4e-55 218.8 210 51.4
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 3.4e-55 218.8 200 53.5
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 5.7e-55 218.0 208 51.9
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 1.7e-54 216.5 187 58.3
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.2e-54 216.1 205 51.7
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.9e-54 215.7 220 49.5
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 3.7e-54 215.3 202 53.0
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.7e-54 215.3 169 59.2
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.9e-54 214.9 209 50.7
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 5.4e-53 211.5 200 54.0
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 7.0e-53 211.1 189 55.0
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 9.2e-53 210.7 238 43.3
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.2e-52 210.3 203 50.2
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 1.6e-52 209.9 200 50.5
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.0e-52 209.5 202 51.5
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 4.6e-52 208.4 201 50.2
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.7e-51 206.5 190 52.1
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 2.8e-49 199.1 200 49.5
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 3.6e-49 198.7 193 50.8
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 3.1e-48 195.7 169 56.8
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 1.2e-47 193.7 187 51.3
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 2.2e-46 189.5 200 48.5
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 2.9e-46 189.1 128 67.2
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 4.1e-45 185.3 197 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 2.3e-43 179.5 174 50.6
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 3.0e-43 179.1 122 67.2
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 8.6e-43 177.6 199 48.7
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 1.6e-41 173.3 202 46.0
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.6e-41 172.2 181 49.7
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.6e-41 172.2 160 53.8
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 3.6e-41 172.2 168 48.8
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.1e-41 171.0 122 64.8
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.8e-40 169.9 175 45.1
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 2.3e-40 169.5 131 61.1
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 3.1e-40 169.1 201 41.8
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 8.9e-40 167.5 130 61.5
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.5e-39 164.5 106 67.0
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 1.3e-38 163.7 195 43.1
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 2.5e-34 149.4 169 46.2
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 3.3e-34 149.1 211 39.3
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 1.8e-32 143.3 171 46.8
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 1.8e-32 143.3 171 46.8
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 2.4e-32 142.9 171 46.8
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 2.4e-32 142.9 171 46.8
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 6.8e-32 141.4 174 41.4
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 1.2e-31 140.6 165 46.7
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 4.4e-31 138.7 164 45.1
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 1.3e-30 137.1 171 44.4
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.3e-27 126.3 130 50.8
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.5e-26 123.6 84 66.7
COL.COLO4_16679 Corchorus olitorius HOM05D002759 ORTHO05D003290 5.6e-26 121.7 113 55.8
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.1e-24 115.9 166 36.7
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 9.9e-23 110.9 91 59.3
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 9.9e-23 110.9 137 41.6
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 2.2e-22 109.8 134 46.3
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 2.2e-22 109.8 134 46.3
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 1.2e-20 104.0 196 32.7
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 1.6e-20 103.6 137 40.9
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 5.6e-18 95.1 116 44.0
COL.COLO4_38329 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.1e-13 80.9 60 61.7
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.1e-08 62.8 82 42.7


User provided reference genes

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