Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 0.0e+00 1409.8 809 100.0
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 5.0e-138 496.1 893 44.9
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 6.0e-115 419.5 874 40.0
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 2.3e-114 417.5 857 39.3
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.6e-112 411.4 847 40.9
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.6e-107 394.8 875 39.2
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 8.1e-104 382.5 918 40.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.5e-99 367.1 894 40.2
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 4.8e-96 356.7 917 37.0
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 7.6e-94 349.4 857 40.0
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 3.2e-92 344.0 853 39.6
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.3e-90 338.6 883 38.2
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.9e-90 337.0 825 40.1
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.9e-90 337.0 825 40.1
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.4e-86 323.9 906 35.4
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 3.4e-86 323.9 906 35.4
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 7.6e-86 322.8 893 35.7
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 2.2e-85 321.2 913 35.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 7.1e-84 316.2 881 37.0
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 1.6e-83 315.1 891 39.2
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.1e-76 292.4 894 35.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 7.1e-76 289.7 879 36.2
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.3e-74 285.4 917 37.0
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 2.3e-74 284.6 994 33.1
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 3.3e-73 280.8 903 35.2
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 4.3e-73 280.4 907 32.6
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.3e-69 268.9 940 32.1
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.7e-69 268.5 999 33.3
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.7e-69 268.5 914 31.4
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 8.5e-69 266.2 907 33.0
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.1e-68 265.8 890 32.7
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.2e-67 262.3 893 33.8
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.2e-67 262.3 930 34.9
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.6e-67 261.9 927 34.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.6e-67 260.4 854 33.7
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.4e-66 258.8 889 33.6
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 2.3e-66 258.1 885 34.5
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 5.9e-62 243.4 922 31.1
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.9e-61 241.1 878 34.3
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 8.5e-61 239.6 893 29.8
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.1e-60 239.2 876 33.2
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.5e-60 238.0 870 33.0
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 9.4e-60 236.1 871 31.5
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 9.7e-57 226.1 849 31.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.3e-56 225.7 880 31.6
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.1e-55 222.6 883 30.8
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.4e-55 221.5 902 27.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.0e-55 219.9 862 33.2
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.2e-54 219.2 893 32.3
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 4.5e-54 217.2 901 32.3
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 5.9e-54 216.9 875 30.6
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 5.9e-54 216.9 888 30.5
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.9e-53 214.5 904 31.9
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.5e-52 212.2 883 32.6
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.2e-51 209.1 956 29.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 3.6e-51 207.6 959 28.8
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.0e-50 206.1 927 29.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.4e-50 205.7 803 31.1
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 1.8e-50 205.3 962 30.2
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 3.0e-50 204.5 829 31.6
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 5.2e-50 203.8 875 30.5
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 6.7e-50 203.4 852 33.9
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.1e-49 202.6 882 30.5
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.0e-49 201.8 790 29.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 5.7e-49 200.3 818 31.2
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.4e-47 194.9 516 35.9
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.6e-46 192.2 923 30.4
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 3.5e-46 191.0 926 33.5
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.7e-45 188.7 823 31.1
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 6.5e-45 186.8 891 31.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 8.5e-45 186.4 879 29.7
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 2.5e-44 184.9 885 30.3
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 7.2e-44 183.3 958 28.2
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 6.1e-43 180.3 945 29.3
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 8.0e-43 179.9 891 32.7
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.3e-42 178.3 823 28.9
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 2.2e-40 171.8 919 31.0
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 8.3e-40 169.9 966 29.0
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 5.3e-39 167.2 897 32.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.1e-39 166.4 271 43.2
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.9e-38 163.7 820 28.2
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.9e-37 161.4 850 28.7
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 2.9e-37 161.4 917 28.6
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 3.8e-37 161.0 888 27.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 3.8e-37 161.0 931 26.9
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 5.0e-37 160.6 790 30.4
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 1.9e-36 158.7 952 29.2
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 4.2e-36 157.5 950 26.7
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 4.2e-36 157.5 952 30.6
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 5.5e-36 157.1 935 26.5
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.2e-35 156.0 883 28.3
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.6e-35 154.5 820 26.6
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 3.0e-34 151.4 339 37.2
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 4.4e-33 147.5 838 29.5
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 9.1e-31 139.8 848 29.7
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 2.0e-30 138.7 950 26.6
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.7e-30 138.3 924 28.4
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 3.5e-30 137.9 229 45.0
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 2.3e-29 135.2 547 29.4
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 5.0e-29 134.0 825 30.7
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.5e-28 131.7 920 29.2
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 3.3e-28 131.3 902 27.1
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.2e-27 129.4 168 49.4
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 2.1e-27 128.6 845 26.5
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.6e-27 127.9 531 30.1
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 4.7e-27 127.5 822 29.4
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 6.1e-27 127.1 855 27.8
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 3.0e-26 124.8 207 41.5
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 4.0e-26 124.4 827 29.7
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 6.8e-26 123.6 825 29.9
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 2.0e-25 122.1 245 40.4
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.6e-25 121.7 823 30.3
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.7e-24 119.0 899 26.1
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 9.2e-23 113.2 909 26.7
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-22 112.8 870 25.1
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.2e-22 112.8 861 26.0
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.2e-22 112.8 999 24.8
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 1.6e-22 112.5 279 38.4
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 1.7e-21 109.0 146 48.6
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 3.9e-21 107.8 109 56.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.5e-20 105.1 892 25.7
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 2.5e-20 105.1 146 48.6
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 9.5e-20 103.2 316 33.9
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.8e-18 99.0 885 24.6
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 8.9e-18 96.7 852 25.8
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 1.3e-16 92.8 868 25.9
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 4.9e-16 90.9 878 23.7
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 6.4e-16 90.5 264 36.7
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.1e-15 89.7 840 25.6
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.1e-12 79.7 69 65.2
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 1.5e-12 79.3 111 46.8
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 5.6e-12 77.4 313 30.7
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 8.1e-11 73.6 187 34.8
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.1e-10 73.2 60 63.3
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 2.3e-10 72.0 166 41.6
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 8.9e-10 70.1 227 32.6
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 8.9e-10 70.1 109 47.7
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 1.5e-09 69.3 339 29.8
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.4e-09 68.2 258 30.6
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 4.4e-09 67.8 909 24.2
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 4.4e-09 67.8 454 26.2
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 5.8e-09 67.4 198 33.8
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 9.8e-09 66.6 82 53.7
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 9.8e-09 66.6 258 32.9
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 1.3e-08 66.2 166 37.3
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.7e-08 65.9 221 30.8
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 3.7e-08 64.7 74 56.8
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 4.9e-08 64.3 212 30.2
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 6.4e-08 63.9 217 31.3
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.1e-07 63.2 160 35.6
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 1.9e-07 62.4 144 36.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.4e-07 62.0 37 70.3
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 3.2e-07 61.6 177 30.5
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 3.2e-07 61.6 194 33.5
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 4.1e-07 61.2 153 35.9
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 5.4e-07 60.8 153 34.6
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 7.1e-07 60.5 178 33.1
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 9.2e-07 60.1 211 30.3
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 9.2e-07 60.1 247 30.0
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 9.2e-07 60.1 144 34.7
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.2e-06 59.7 188 30.9
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 1.2e-06 59.7 211 31.3
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.1e-06 58.9 169 37.9
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 2.7e-06 58.5 834 24.3
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 3.5e-06 58.2 195 33.8


User provided reference genes

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