Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 9.2e-83 310.1 145 100.0
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.8e-63 245.4 139 80.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 3.6e-63 245.0 146 80.1
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.2e-61 240.0 144 77.8
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.5e-61 239.6 149 76.5
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 2.6e-61 238.8 120 88.3
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 7.5e-61 237.3 144 76.4
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.7e-60 236.1 118 87.3
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.7e-60 236.1 145 75.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 2.9e-60 235.3 147 76.9
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 4.9e-60 234.6 146 78.1
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.4e-60 234.2 145 74.5
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-59 233.0 144 75.0
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.9e-59 232.6 124 82.3
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.2e-59 231.9 142 75.4
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 4.1e-59 231.5 147 72.8
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 9.2e-59 230.3 138 78.3
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 9.2e-59 230.3 120 83.3
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.6e-58 229.6 143 74.1
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.6e-58 229.6 141 74.5
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 2.1e-58 229.2 120 81.7
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.1e-58 229.2 144 74.3
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.7e-58 228.8 124 80.6
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 4.6e-58 228.0 144 70.8
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 6.0e-58 227.6 118 86.4
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 7.8e-58 227.3 150 72.7
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 7.8e-58 227.3 146 72.6
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.7e-57 226.1 144 72.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 2.3e-57 225.7 139 76.3
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.3e-57 225.7 138 73.2
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 3.0e-57 225.3 144 74.3
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.9e-57 224.9 145 70.3
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 6.6e-57 224.2 144 72.2
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 8.6e-57 223.8 144 71.5
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.1e-56 223.4 144 72.2
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.1e-56 223.4 121 83.5
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.9e-56 222.6 139 74.8
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.5e-56 222.2 145 71.7
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 3.3e-56 221.9 142 71.8
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.3e-56 221.5 144 70.8
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 4.3e-56 221.5 139 74.1
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 7.3e-56 220.7 144 69.4
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 9.5e-56 220.3 124 78.2
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.2e-55 219.9 140 72.1
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.6e-55 219.5 145 71.7
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.6e-55 219.5 142 73.2
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 2.1e-55 219.2 144 70.1
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.8e-55 218.8 148 71.6
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 2.8e-55 218.8 143 72.0
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.7e-55 218.0 144 69.4
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 6.2e-55 217.6 146 71.2
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 8.1e-55 217.2 145 71.7
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.1e-54 216.9 144 70.8
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.1e-54 216.9 120 79.2
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.1e-54 216.9 144 69.4
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.1e-54 216.9 145 71.0
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.4e-54 215.7 144 68.8
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.1e-54 215.3 137 72.3
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.0e-54 214.9 144 68.8
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.8e-54 214.2 136 73.5
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.2e-53 213.4 150 71.3
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.5e-53 213.0 118 77.1
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.0e-53 212.6 120 77.5
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.0e-53 212.6 117 79.5
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 4.4e-53 211.5 118 79.7
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.3e-52 209.9 152 65.8
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.7e-52 209.5 143 67.8
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.7e-52 209.5 142 69.0
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.9e-52 208.8 139 69.8
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 2.9e-52 208.8 139 70.5
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 3.8e-52 208.4 142 68.3
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.4e-52 207.6 120 72.5
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.4e-52 207.6 135 71.9
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 6.4e-52 207.6 150 66.7
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 6.4e-52 207.6 145 68.3
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.9e-51 206.1 142 67.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.9e-51 206.1 142 66.2
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.9e-51 206.1 118 74.6
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 3.2e-51 205.3 141 68.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 4.1e-51 204.9 144 66.7
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.2e-50 203.4 142 66.2
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.2e-50 203.4 142 64.8
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.6e-50 203.0 138 67.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.6e-50 203.0 138 67.4
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 4.6e-50 201.4 143 65.7
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 6.0e-50 201.1 126 66.7
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 6.0e-50 201.1 118 72.9
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.7e-49 199.5 118 74.6
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.7e-49 199.5 120 75.8
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 5.1e-49 198.0 137 66.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 5.6e-48 194.5 109 77.1
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.7e-47 191.4 141 63.8
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 8.1e-47 190.7 135 64.4
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.1e-47 190.7 139 68.3
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 8.1e-47 190.7 138 63.0
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 3.1e-46 188.7 124 64.5
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 6.9e-46 187.6 166 56.6
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.2e-45 186.8 141 61.7
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.5e-45 186.4 142 65.5
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 2.6e-45 185.7 124 64.5
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 2.4e-38 162.5 84 85.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.7e-34 149.1 145 55.2
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 6.0e-34 147.9 118 55.1
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.9e-33 145.2 75 85.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 8.7e-33 144.1 81 75.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.3e-31 140.2 117 54.7
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-28 130.2 98 56.1
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.1e-27 127.1 74 74.3
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 2.4e-27 125.9 124 43.5
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 5.5e-27 124.8 145 50.3
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.7e-26 122.5 90 60.0
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 4.6e-26 121.7 90 60.0
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.9e-24 116.3 119 51.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.9e-24 116.3 89 56.2
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 9.6e-24 114.0 118 48.3
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.1e-23 112.8 58 86.2
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.8e-22 109.8 93 49.5
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 2.6e-21 105.9 99 52.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 7.1e-19 97.8 92 50.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-17 92.8 99 42.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 3.7e-15 85.5 67 59.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.5e-13 80.1 66 63.6
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 2.0e-13 79.7 54 66.7
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.2e-10 70.5 66 59.1
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 4.6e-10 68.6 70 47.1
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 3.0e-09 65.9 41 65.9
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 8.8e-09 64.3 61 52.5
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.7e-07 60.1 39 66.7
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 3.1e-06 55.8 32 75.0
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 4.1e-06 55.5 86 40.7


User provided reference genes

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