Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 8.9e-49 198.0 253 100.0
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.3e-44 184.1 257 96.9
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.8e-33 147.1 234 91.5
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 8.9e-33 144.8 240 87.9
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.5e-32 144.1 243 87.2
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 3.7e-31 139.4 241 80.5
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 6.4e-31 138.7 254 83.5
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 6.4e-31 138.7 244 84.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.9e-30 137.1 245 82.9
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 2.4e-30 136.7 246 82.5
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 4.1e-30 136.0 239 87.0
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.1e-30 136.0 253 78.7
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.2e-29 134.4 236 86.9
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.7e-29 133.3 239 83.3
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.7e-29 133.3 236 87.3
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.7e-29 133.3 253 85.4
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.3e-28 131.0 253 82.2
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.3e-28 131.0 261 74.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 8.6e-28 128.3 249 76.7
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.1e-27 127.9 246 78.9
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.1e-27 127.9 245 77.6
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.5e-27 127.5 240 85.4
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.5e-27 127.5 248 77.4
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.5e-27 126.7 240 80.0
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.5e-27 126.7 240 80.0
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.5e-27 126.7 246 78.0
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 3.3e-27 126.3 246 78.0
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 7.3e-27 125.2 234 85.5
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 9.5e-27 124.8 237 82.7
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 9.5e-27 124.8 253 80.2
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.2e-26 124.4 239 79.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.2e-26 124.4 250 77.2
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.2e-26 124.4 246 78.0
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.2e-26 124.4 263 78.3
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.1e-26 123.6 240 80.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.1e-26 123.6 249 77.1
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.6e-26 122.9 250 68.4
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 3.6e-26 122.9 244 78.7
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 4.7e-26 122.5 244 76.2
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 6.2e-26 122.1 247 78.5
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 8.1e-26 121.7 234 80.8
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.4e-25 120.9 239 84.5
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.2e-25 119.0 234 85.9
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 8.9e-25 118.2 242 78.1
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.0e-24 117.1 246 77.2
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 2.6e-24 116.7 248 76.2
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 4.4e-24 115.9 248 75.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 5.8e-24 115.5 247 76.1
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 9.9e-24 114.8 249 77.1
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.7e-23 114.0 240 77.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.7e-23 112.8 233 73.4
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.4e-22 110.9 247 76.9
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.9e-22 110.5 244 76.6
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.2e-21 107.8 239 82.0
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.6e-21 107.5 273 73.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.7e-21 106.7 266 79.7
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.5e-21 106.3 243 78.6
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 3.5e-21 106.3 247 66.8
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.6e-21 105.9 268 78.0
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.6e-21 105.9 265 71.3
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-20 103.6 267 78.3
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 3.9e-20 102.8 247 74.1
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 6.6e-20 102.1 250 79.2
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.9e-19 100.5 236 75.8
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 3.3e-19 99.8 50 88.0
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.3e-19 99.8 261 71.6
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.6e-19 99.0 248 79.4
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 5.6e-19 99.0 243 80.2
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 9.5e-19 98.2 229 84.3
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.1e-18 95.1 211 77.7
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.1e-17 94.7 198 86.4
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 4.0e-17 92.8 50 80.0
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.0e-16 90.5 152 77.6
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 2.0e-16 90.5 152 77.6
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 2.0e-16 90.5 239 80.3
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 7.6e-16 88.6 50 76.0
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 9.9e-16 88.2 201 78.1
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.3e-15 87.8 69 62.3
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.3e-15 87.8 50 74.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.7e-15 87.4 50 76.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.7e-15 87.4 50 74.0
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 2.9e-15 86.7 133 83.5
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 4.9e-15 85.9 153 77.1
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 4.9e-15 85.9 69 59.4
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 4.9e-15 85.9 50 74.0
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.9e-15 85.9 68 63.2
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-14 84.3 71 69.0
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.9e-14 84.0 210 88.1
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 5.4e-14 82.4 52 73.1
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 5.4e-14 82.4 52 73.1
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 7.1e-14 82.0 235 77.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 7.1e-14 82.0 47 83.0
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 7.1e-14 82.0 52 75.0
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 9.2e-14 81.6 241 79.7
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.2e-13 81.3 49 73.5
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.2e-13 81.3 49 73.5
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.2e-13 81.3 44 79.5
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.6e-13 80.9 50 68.0
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.7e-13 80.1 52 71.2
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.5e-13 79.7 236 74.2
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 4.6e-13 79.3 236 73.7
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.0e-13 79.0 50 70.0
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 7.8e-13 78.6 50 68.0
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 7.8e-13 78.6 215 82.3
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 1.7e-12 77.4 217 78.3
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.0e-12 76.6 47 76.6
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.9e-12 76.3 50 66.0
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 5.1e-12 75.9 48 68.8
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 8.7e-12 75.1 51 68.6
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 1.1e-11 74.7 47 74.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 5.6e-11 72.4 50 62.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 5.6e-11 72.4 50 62.0
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 5.6e-11 72.4 50 64.0
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.6e-11 71.6 58 58.6
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.2e-10 71.2 51 64.7
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 6.2e-10 68.9 48 66.7
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.4e-09 67.8 268 57.5
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.4e-09 67.0 51 62.7
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.0e-09 66.2 69 52.2
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 5.2e-09 65.9 51 62.7
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.2e-09 65.9 48 64.6
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 5.2e-09 65.9 48 64.6
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.2e-09 65.9 51 62.7
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 6.9e-09 65.5 92 41.3
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 6.9e-09 65.5 42 69.0
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.2e-08 64.7 50 60.0
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.0e-08 63.9 51 60.8
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 2.0e-08 63.9 42 69.0
SGA_v2.0_scaffold32G13220 Striga asiatica HOM05D039287 ORTHO05D004724 2.0e-08 63.9 133 83.5
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.0e-08 63.9 51 60.8
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 2.6e-08 63.5 39 71.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 4.4e-08 62.8 51 58.8
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 5.8e-08 62.4 51 58.8
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 7.6e-08 62.0 46 56.5
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.6e-08 62.0 42 66.7
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 7.6e-08 62.0 209 83.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 9.9e-08 61.6 51 60.8
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.9e-08 61.6 109 90.8
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 9.9e-08 61.6 51 60.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 9.9e-08 61.6 47 61.7
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 9.9e-08 61.6 51 58.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.7e-07 60.8 174 80.5
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.2e-07 60.5 51 56.9
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 2.9e-07 60.1 42 61.9
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 2.9e-07 60.1 43 62.8
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 4.9e-07 59.3 43 62.8
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.9e-07 59.3 43 62.8
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.9e-07 59.3 43 62.8
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.9e-07 59.3 43 62.8
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.9e-07 59.3 43 62.8
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 4.9e-07 59.3 43 62.8
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 6.4e-07 58.9 42 61.9
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 6.4e-07 58.9 32 81.2
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 8.4e-07 58.5 106 91.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 8.4e-07 58.5 42 69.0
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.4e-06 57.8 47 59.6
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.9e-06 57.4 43 60.5
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 7.1e-06 55.5 42 64.3
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 7.1e-06 55.5 51 54.9
Lsat_1_v5_gn_4_67220 Lactuca sativa HOM05D039287 ORTHO05D004724 9.3e-06 55.1 140 83.6


User provided reference genes

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