Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu036632.1 Olea europaea HOM05D003476 ORTHO05D004057 3.9e-27 124.0 61 100.0
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 9.0e-24 112.8 61 90.2
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 1.7e-22 108.6 61 85.2
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.7e-22 108.6 61 82.0
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.7e-22 108.6 61 82.0
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.9e-22 107.8 61 83.6
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 3.8e-22 107.5 61 83.6
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 5.0e-22 107.1 61 80.3
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 5.0e-22 107.1 61 83.6
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 6.5e-22 106.7 61 83.6
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 1.4e-21 105.5 61 82.0
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.4e-21 105.5 60 85.0
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 4.2e-21 104.0 61 80.3
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 4.2e-21 104.0 61 80.3
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 7.2e-21 103.2 61 83.6
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 9.3e-21 102.8 61 80.3
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 9.3e-21 102.8 61 80.3
Prupe.2G246200 Prunus persica HOM05D003476 ORTHO05D004057 1.2e-20 102.4 61 78.7
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 1.6e-20 102.1 61 80.3
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.1e-20 101.7 61 80.3
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 3.6e-20 100.9 60 80.0
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 3.6e-20 100.9 61 78.7
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 4.6e-20 100.5 61 80.3
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 6.1e-20 100.1 61 75.4
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 6.1e-20 100.1 61 82.0
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 7.9e-20 99.8 61 78.7
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 7.9e-20 99.8 61 77.0
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 7.9e-20 99.8 61 77.0
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 1.0e-19 99.4 61 77.0
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 78.7
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 77.0
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 78.7
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 77.0
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 80.3
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 80.3
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 82.0
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 1.3e-19 99.0 58 81.0
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 1.3e-19 99.0 60 78.3
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 1.3e-19 99.0 61 77.0
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 1.8e-19 98.6 63 77.8
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 1.8e-19 98.6 60 81.7
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 1.8e-19 98.6 60 81.7
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.8e-19 98.6 61 78.7
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 2.3e-19 98.2 61 77.0
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 2.3e-19 98.2 61 77.0
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 3.0e-19 97.8 61 80.3
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 3.0e-19 97.8 63 77.8
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 3.0e-19 97.8 60 80.0
Solyc04g072110.4 Solanum lycopersicum HOM05D003476 ORTHO05D004057 3.0e-19 97.8 61 75.4
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 3.0e-19 97.8 61 77.0
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 5.1e-19 97.1 61 77.0
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 6.7e-19 96.7 61 75.4
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 6.7e-19 96.7 61 73.8
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.7e-19 96.7 61 73.8
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 6.7e-19 96.7 61 70.5
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 8.7e-19 96.3 61 77.0
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 8.7e-19 96.3 75 68.0
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 8.7e-19 96.3 61 75.4
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 1.1e-18 95.9 61 78.7
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.5e-18 95.5 60 81.7
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 1.5e-18 95.5 61 75.4
vmacro06994 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.5e-18 95.5 60 78.3
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.9e-18 95.1 60 78.3
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 1.9e-18 95.1 61 73.8
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.5e-18 94.7 60 76.7
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 2.5e-18 94.7 61 77.0
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 3.3e-18 94.4 61 73.8
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.3e-18 94.4 61 72.1
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 4.3e-18 94.0 61 72.1
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 4.3e-18 94.0 61 68.9
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 4.3e-18 94.0 61 78.7
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 5.7e-18 93.6 61 78.7
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 7.4e-18 93.2 61 73.8
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 7.4e-18 93.2 60 76.7
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 7.4e-18 93.2 61 73.8
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 7.4e-18 93.2 60 76.7
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 7.4e-18 93.2 58 77.6
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 7.4e-18 93.2 61 70.5
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 7.4e-18 93.2 61 70.5
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 9.7e-18 92.8 61 72.1
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 9.7e-18 92.8 61 73.8
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 9.7e-18 92.8 61 77.0
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 9.7e-18 92.8 61 77.0
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 9.7e-18 92.8 61 73.8
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 9.7e-18 92.8 61 72.1
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 9.7e-18 92.8 61 70.5
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.3e-17 92.4 61 73.8
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 1.3e-17 92.4 61 72.1
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 1.6e-17 92.0 57 77.2
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.6e-17 92.0 60 75.0
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.6e-17 92.0 61 72.1
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.6e-17 92.0 61 72.1
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 1.6e-17 92.0 61 72.1
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 2.2e-17 91.7 61 72.1
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 2.8e-17 91.3 61 73.8
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.8e-17 91.3 61 72.1
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 2.8e-17 91.3 61 75.4
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 4.8e-17 90.5 61 73.8
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 4.8e-17 90.5 58 74.1
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 6.3e-17 90.1 59 76.3
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 6.3e-17 90.1 59 76.3
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 6.3e-17 90.1 59 76.3
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 6.3e-17 90.1 59 76.3
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 6.3e-17 90.1 59 76.3
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 6.3e-17 90.1 61 78.7
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 6.3e-17 90.1 61 70.5
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 8.2e-17 89.7 59 74.6
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 8.2e-17 89.7 61 73.8
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 1.1e-16 89.4 59 74.6
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 1.1e-16 89.4 59 74.6
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 1.1e-16 89.4 59 74.6
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.4e-16 89.0 59 74.6
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.4e-16 89.0 61 68.9
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 1.8e-16 88.6 59 74.6
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.8e-16 88.6 60 73.3
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.4e-16 88.2 61 68.9
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 2.4e-16 88.2 59 74.6
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 4.1e-16 87.4 61 72.1
MBI14_g13584_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 4.1e-16 87.4 61 62.3
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 4.1e-16 87.4 61 62.3
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 4.1e-16 87.4 59 72.9
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 6.9e-16 86.7 59 72.9
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 6.9e-16 86.7 59 72.9
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 9.0e-16 86.3 59 71.2
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 9.0e-16 86.3 62 74.2
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 1.2e-15 85.9 59 71.2
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 1.2e-15 85.9 61 68.9
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 2.0e-15 85.1 59 71.2
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 2.0e-15 85.1 52 76.9
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 2.6e-15 84.7 59 71.2
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 2.6e-15 84.7 62 72.6
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 3.4e-15 84.3 62 69.4
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 3.4e-15 84.3 59 71.2
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 5.9e-15 83.6 61 59.0
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 5.9e-15 83.6 61 68.9
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 5.9e-15 83.6 57 68.4
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 7.7e-15 83.2 59 67.8
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 7.7e-15 83.2 62 69.4
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 1.3e-14 82.4 59 66.1
ATR0618G195 Amborella trichopoda HOM05D003476 ORTHO05D004057 1.7e-14 82.0 56 64.3
AagrBONN_evm.TU.Sc2ySwM_228.5499 Anthoceros agrestis HOM05D003476 ORTHO05D004057 1.7e-14 82.0 61 65.6
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 2.9e-14 81.3 61 68.9
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 3.8e-14 80.9 60 60.0
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 3.8e-14 80.9 62 69.4
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 3.8e-14 80.9 62 69.4
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 5.0e-14 80.5 63 65.1
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 5.5e-13 77.0 51 68.6
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 5.5e-13 77.0 56 60.7
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 7.9e-12 73.2 61 63.9
CBR_g48322 Chara braunii HOM05D003476 ORTHO05D004057 6.7e-11 70.1 60 55.0
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 1.4e-08 62.4 60 61.7
MBI08_g04934_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 6.9e-08 60.1 63 49.2
MBI14_g33799_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.0e-07 58.5 42 57.1
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 3.4e-07 57.8 47 57.4


User provided reference genes

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