Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.6e-222 775.8 392 100.0
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 9.7e-196 686.8 390 87.9
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.4e-194 682.9 390 87.2
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 5.3e-194 681.0 390 86.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.5e-191 672.9 389 85.9
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 5.5e-191 671.0 388 85.3
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 7.2e-191 670.6 385 86.5
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.2e-190 669.8 387 86.8
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.1e-190 669.1 389 84.8
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 2.1e-190 669.1 391 85.2
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.1e-190 669.1 387 85.8
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.7e-190 668.7 390 83.6
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 6.1e-190 667.5 387 86.3
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-189 666.4 388 85.3
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.8e-189 666.0 388 84.8
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 2.3e-189 665.6 390 84.4
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 6.8e-189 664.1 387 85.5
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 8.8e-189 663.7 391 85.9
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.2e-188 663.3 389 84.1
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.5e-188 662.9 388 84.3
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.0e-188 662.5 388 83.8
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.0e-188 662.5 390 85.4
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.6e-188 662.1 388 83.2
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 4.4e-188 661.4 388 83.0
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 4.4e-188 661.4 387 85.5
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 9.8e-188 660.2 388 82.7
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.7e-187 659.4 391 83.1
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 2.8e-187 658.7 383 84.6
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 2.8e-187 658.7 389 84.6
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.8e-187 658.7 390 83.8
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 6.3e-187 657.5 390 83.8
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 6.3e-187 657.5 388 84.0
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 6.3e-187 657.5 387 85.3
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.4e-186 656.4 388 84.0
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.8e-186 656.0 390 83.1
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.8e-186 656.0 388 83.5
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 2.4e-186 655.6 388 83.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 4.1e-186 654.8 390 82.8
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 4.1e-186 654.8 386 83.7
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.6e-185 652.9 390 83.1
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.6e-185 652.9 391 83.1
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 3.5e-185 651.7 390 83.1
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 5.9e-185 651.0 400 82.5
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 7.7e-185 650.6 387 82.2
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.7e-184 649.4 380 82.9
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.2e-184 649.0 391 83.6
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 3.8e-184 648.3 390 82.6
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 5.0e-184 647.9 387 81.9
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 5.0e-184 647.9 388 82.0
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 8.5e-184 647.1 387 81.7
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 8.5e-184 647.1 372 85.8
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 8.5e-184 647.1 386 82.6
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 8.5e-184 647.1 385 82.9
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.5e-183 646.4 391 81.1
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.5e-183 646.4 391 82.6
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.5e-183 645.6 383 82.0
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.5e-183 645.6 392 81.9
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 7.2e-183 644.0 389 81.7
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.2e-182 643.3 388 81.7
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.6e-182 642.9 387 81.1
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.1e-182 642.5 399 81.5
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 2.7e-182 642.1 388 80.9
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 2.7e-182 642.1 388 82.0
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.7e-182 642.1 389 81.5
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 4.7e-182 641.3 447 73.4
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.1e-182 641.0 387 80.9
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 6.1e-182 641.0 386 81.3
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.0e-181 640.2 387 81.1
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 1.4e-181 639.8 387 80.6
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.4e-181 639.8 389 81.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.4e-181 639.8 387 80.6
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.8e-181 639.4 387 81.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.8e-181 639.4 386 80.8
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.0e-181 638.6 387 80.6
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 3.0e-181 638.6 388 80.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 4.0e-181 638.3 387 80.9
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 4.0e-181 638.3 382 81.9
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 8.8e-181 637.1 387 80.6
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 8.8e-181 637.1 386 81.1
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 3.4e-180 635.2 388 80.2
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 3.4e-180 635.2 387 80.6
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 4.4e-180 634.8 388 80.2
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 5.7e-180 634.4 385 81.6
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.7e-179 632.9 388 80.2
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.7e-179 631.7 388 79.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 3.7e-179 631.7 382 81.2
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 3.7e-179 631.7 386 80.1
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 4.9e-179 631.3 385 81.0
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-178 629.8 385 80.5
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.8e-178 629.4 381 81.1
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 3.1e-178 628.6 391 79.3
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 7.0e-178 627.5 385 80.0
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 7.0e-178 627.5 382 80.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.2e-177 626.7 382 80.6
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.0e-177 625.9 385 79.5
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.5e-177 625.2 385 79.7
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.9e-177 624.4 385 79.2
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 5.9e-177 624.4 385 79.7
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 7.7e-177 624.0 388 80.2
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 4.0e-173 611.7 399 76.2
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 4.1e-170 601.7 395 75.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.0e-168 597.0 372 77.4
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 5.6e-167 591.3 340 84.1
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 7.3e-167 590.9 385 74.8
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.9e-163 578.9 387 72.4
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 8.6e-160 567.4 390 75.4
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.1e-153 546.2 356 74.2
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 8.9e-149 530.8 391 71.1
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.7e-145 519.2 289 87.2
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 3.5e-145 518.8 385 67.5
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 4.6e-145 518.5 365 68.8
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 6.0e-145 518.1 378 66.4
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.1e-141 507.3 382 68.6
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 9.9e-140 500.7 344 75.3
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.6e-137 493.4 390 67.2
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 2.4e-133 479.6 363 63.6
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.6e-132 474.6 370 63.5
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.7e-131 473.4 368 65.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 6.4e-131 471.5 358 65.1
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-129 467.2 275 82.5
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 9.9e-124 447.6 276 79.3
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 9.9e-124 447.6 389 63.0
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.2e-121 440.7 289 73.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 5.8e-116 421.8 252 81.3
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.1e-110 403.3 252 79.4
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.3e-109 398.7 288 71.2
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.0e-108 396.7 303 67.3
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 2.8e-102 376.3 259 73.0
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 9.4e-98 361.3 211 86.7
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 6.1e-97 358.6 250 74.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.9e-96 355.9 250 72.8
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 7.4e-95 351.7 355 51.3
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.8e-93 347.1 331 52.0
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.7e-89 333.2 218 76.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 4.4e-87 325.9 226 75.7
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.3e-86 324.3 201 77.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.7e-75 287.3 211 68.7
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.4e-72 277.7 174 80.5
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.0e-60 237.3 161 71.4
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 3.5e-60 236.5 124 87.9
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 6.6e-59 232.3 136 86.8
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 6.6e-59 232.3 370 38.9
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 4.3e-58 229.6 161 70.2
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 2.3e-56 223.8 291 43.3
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 5.2e-48 196.1 134 73.9
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 3.6e-41 173.3 115 79.1
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 2.4e-37 160.6 95 81.1
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 4.6e-36 156.4 110 77.3
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.3e-35 154.8 85 84.7
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 3.3e-34 150.2 112 71.4
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 2.4e-29 134.0 77 88.3
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 3.8e-22 110.2 117 56.4
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.1e-21 108.6 84 69.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 5.4e-21 106.3 90 58.9
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 4.3e-18 96.7 60 88.3
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 7.3e-18 95.9 60 88.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 7.6e-15 85.9 68 64.7
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 4.9e-14 83.2 50 76.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.4e-13 80.9 58 58.6
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.1e-10 72.0 44 77.3
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 4.8e-09 66.6 220 28.2
QL09p046950 Quercus lobata HOM05D004538 ORTHO05D337738 8.4e-06 55.8 31 87.1


User provided reference genes

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