Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu036148.1 Olea europaea HOM05D002515 ORTHO05D002722 0.0e+00 1083.6 563 100.0
Cc06_g02660 Coffea canephora HOM05D002515 ORTHO05D002722 3.9e-97 359.8 647 39.7
Nitab4.5_0000216g0300 Nicotiana tabacum HOM05D002515 ORTHO05D002722 2.5e-80 303.9 513 40.0
Peaxi162Scf00094g00141 Petunia axillaris HOM05D002515 ORTHO05D002722 2.4e-78 297.4 631 36.3
Nitab4.5_0000202g0110 Nicotiana tabacum HOM05D002515 ORTHO05D002722 6.9e-78 295.8 598 37.5
Sopen10g034200 Solanum pennellii HOM05D002515 ORTHO05D002722 4.5e-77 293.1 629 38.3
Solyc10g084750.1 Solanum lycopersicum HOM05D002515 ORTHO05D002722 2.2e-76 290.8 629 38.8
Rhsim04G0157000 Rhododendron simsii HOM05D002515 ORTHO05D002722 6.5e-76 289.3 604 37.4
Rhsim04G0156800 Rhododendron simsii HOM05D002515 ORTHO05D002722 8.5e-76 288.9 605 37.7
Actinidia13143 Actinidia chinensis HOM05D002515 ORTHO05D002722 1.1e-72 278.5 554 36.1
Actinidia05311 Actinidia chinensis HOM05D002515 ORTHO05D002722 5.3e-70 269.6 575 36.2
Nitab4.5_0002018g0030 Nicotiana tabacum HOM05D002515 ORTHO05D002722 3.5e-69 266.9 598 38.0
vmacro08655 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 8.5e-68 262.3 615 35.4
CSS0028630 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.9e-67 261.2 574 37.1
SGA_v2.0_scaffold35G14232 Striga asiatica HOM05D002515 ORTHO05D002722 3.2e-67 260.4 586 35.3
PGSC0003DMG400011004 Solanum tuberosum HOM05D002515 ORTHO05D002722 4.8e-63 246.5 422 41.9
TAR633G1102 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.2e-61 241.9 613 32.6
TWI74G1566 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 5.9e-61 239.6 613 33.9
Nitab4.5_0006455g0020 Nicotiana tabacum HOM05D002515 ORTHO05D002722 4.2e-59 233.4 623 35.5
Peaxi162Scf00165g01219 Petunia axillaris HOM05D002515 ORTHO05D002722 5.5e-59 233.0 573 36.8
Migut.L01943 Erythranthe guttata HOM05D002515 ORTHO05D002722 1.8e-57 228.0 497 39.4
MD04G1128800 Malus domestica HOM05D002515 ORTHO05D002722 4.0e-57 226.9 600 32.3
SalBow4G1848 Salvia bowleyana HOM05D002515 ORTHO05D002722 4.0e-57 226.9 490 35.1
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 8.3e-55 219.2 547 35.1
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 2.7e-53 214.2 644 31.7
Ciclev10013810m.g Citrus clementina HOM05D002515 ORTHO05D002722 1.3e-52 211.8 576 32.6
Potri.016G095500 Populus trichocarpa HOM05D002515 ORTHO05D002722 2.2e-52 211.1 524 33.6
Thecc.05G040000 Theobroma cacao HOM05D002515 ORTHO05D002722 5.5e-51 206.5 619 32.6
FAN09G4793 Fragaria x ananassa HOM05D002515 ORTHO05D002722 2.1e-50 204.5 545 33.8
FvH4_6g13720 Fragaria vesca HOM05D002515 ORTHO05D002722 3.6e-50 203.8 542 33.2
Cfa017383 Carpinus fangiana HOM05D002515 ORTHO05D002722 4.7e-50 203.4 606 30.2
FAN14G0333 Fragaria x ananassa HOM05D002515 ORTHO05D002722 8.8e-49 199.1 570 32.1
PGSC0003DMG400008910 Solanum tuberosum HOM05D002515 ORTHO05D002722 1.5e-48 198.4 599 33.7
CiPaw.09G192400 Carya illinoinensis HOM05D002515 ORTHO05D002722 2.0e-48 198.0 532 32.3
Sopen09g005510 Solanum pennellii HOM05D002515 ORTHO05D002722 2.6e-48 197.6 593 33.6
Dinv35606 Davidia involucrata HOM05D002515 ORTHO05D002722 1.3e-47 195.3 353 39.9
Haze_20788 Corylus avellana HOM05D002515 ORTHO05D002722 2.8e-47 194.1 585 29.7
Lj2A95G42 Lonicera japonica HOM05D002515 ORTHO05D002722 8.3e-47 192.6 496 33.9
FAN02G3265 Fragaria x ananassa HOM05D002515 ORTHO05D002722 9.1e-46 189.1 511 32.9
MD12G1141400 Malus domestica HOM05D002515 ORTHO05D002722 1.2e-45 188.7 546 31.3
QL07p048238 Quercus lobata HOM05D002515 ORTHO05D002722 1.6e-45 188.3 597 31.0
PGR004G0883 Punica granatum HOM05D002515 ORTHO05D002722 8.6e-44 182.6 575 29.4
CANSAT35G0014 Cannabis sativa HOM05D002515 ORTHO05D002722 2.5e-43 181.0 539 30.8
Solyc09g010790.2 Solanum lycopersicum HOM05D002515 ORTHO05D002722 2.5e-43 181.0 601 32.4
RcHm_v2.0_Chr3g0466591 Rosa chinensis HOM05D002515 ORTHO05D002722 3.3e-43 180.6 422 35.8
Atru.chr8.1972 Acer truncatum HOM05D002515 ORTHO05D002722 3.6e-42 177.2 534 31.5
Lj6g0009284 Lotus japonicus HOM05D002515 ORTHO05D002722 3.6e-42 177.2 542 31.0
Lalb_Chr01g0011091 Lupinus albus HOM05D002515 ORTHO05D002722 6.1e-42 176.4 589 29.9
Sabra16G0101300 Salix brachista HOM05D002515 ORTHO05D002722 1.8e-41 174.9 439 34.9
GSVIVG01034175001 Vitis vinifera HOM05D002515 ORTHO05D002722 2.0e-40 171.4 406 34.5
Nn2g10370 Nelumbo nucifera HOM05D002515 ORTHO05D002722 1.7e-39 168.3 633 28.9
Sc01g0004350 Simmondsia chinensis HOM05D002515 ORTHO05D002722 6.4e-39 166.4 582 29.6
TAR636G1413 Trochodendron aralioides HOM05D002515 ORTHO05D002722 4.1e-38 163.7 381 35.2
Lalb_Chr03g0036731 Lupinus albus HOM05D002515 ORTHO05D002722 5.4e-38 163.3 620 29.7
Phvul.007G107700 Phaseolus vulgaris HOM05D002515 ORTHO05D002722 1.2e-37 162.2 589 28.4
Dinv35605 Davidia involucrata HOM05D002515 ORTHO05D002722 2.7e-37 161.0 274 43.8
MBI14_g20110_MAGBIO Magnolia biondii HOM05D002515 ORTHO05D002722 7.8e-37 159.5 595 30.1
Aqoxy4G02918 Aquilegia oxysepala HOM05D002515 ORTHO05D002722 1.0e-36 159.1 583 29.3
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 3.9e-36 157.1 614 28.2
Medtr1g047660 Medicago truncatula HOM05D002515 ORTHO05D002722 3.3e-35 154.1 646 27.4
FAN05G1797 Fragaria x ananassa HOM05D002515 ORTHO05D002722 2.8e-34 151.0 337 36.2
THA.LOC104816274 Tarenaya hassleriana HOM05D002515 ORTHO05D002722 3.6e-34 150.6 589 28.0
Glyma.10G126600 Glycine max HOM05D002515 ORTHO05D002722 6.2e-34 149.8 548 27.4
Gohir.D11G345600 Gossypium hirsutum HOM05D002515 ORTHO05D002722 6.8e-33 146.4 515 29.1
Gohir.A11G326700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 8.9e-33 146.0 509 29.1
Gorai.007G375900 Gossypium raimondii HOM05D002515 ORTHO05D002722 8.9e-33 146.0 514 29.4
Cfa011498 Carpinus fangiana HOM05D002515 ORTHO05D006653 1.2e-32 145.6 507 28.0
Manes.09G091300 Manihot esculenta HOM05D002515 ORTHO05D002722 2.0e-32 144.8 513 29.2
QL01p032098 Quercus lobata HOM05D002515 ORTHO05D002722 2.0e-32 144.8 607 28.3
Carub.0006s0118 Capsella rubella HOM05D002515 ORTHO05D002722 3.4e-32 144.1 619 27.6
Thhalv10012673m.g Eutrema salsugineum HOM05D002515 ORTHO05D002722 2.2e-31 141.4 665 27.1
TPR.G31257 Trifolium pratense HOM05D002515 ORTHO05D002722 2.2e-31 141.4 540 28.5
CiPaw.13G094800 Carya illinoinensis HOM05D002515 ORTHO05D002722 6.4e-31 139.8 602 26.7
Aa31LG1G22410 Aethionema arabicum HOM05D002515 ORTHO05D002722 1.4e-30 138.7 606 27.7
arahy.Tifrunner.gnm1.ann1.T3EUR0 Arachis hypogaea HOM05D002515 ORTHO05D002722 1.9e-30 138.3 584 26.7
DCAR_009231 Daucus carota HOM05D002515 ORTHO05D002722 1.9e-30 138.3 625 27.7
Duzib093G1384 Durio zibethinus HOM05D002515 ORTHO05D002722 1.2e-29 135.6 667 26.8
Duzib128G0266 Durio zibethinus HOM05D002515 ORTHO05D002722 2.7e-29 134.4 552 28.1
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 1.0e-28 132.5 580 27.2
arahy.Tifrunner.gnm1.ann1.6LJ86G Arachis hypogaea HOM05D002515 ORTHO05D002722 1.3e-28 132.1 608 26.8
AL6G11620 Arabidopsis lyrata HOM05D002515 ORTHO05D002722 3.0e-28 131.0 642 26.8
Manes.04G034800 Manihot esculenta HOM05D002515 ORTHO05D002722 3.0e-28 131.0 618 26.9
Sp6g40090 Schrenkiella parvula HOM05D002515 ORTHO05D002722 1.1e-27 129.0 618 27.3
CARHR211020 Cardamine hirsuta HOM05D002515 ORTHO05D002722 1.9e-27 128.3 656 27.6
A10p33270 Brassica napus HOM05D002515 ORTHO05D002722 4.3e-27 127.1 604 26.8
EL10Ac5g11575 Beta vulgaris HOM05D002515 ORTHO05D002722 5.6e-27 126.7 433 30.9
Dinv16998 Davidia involucrata HOM05D002515 ORTHO05D002722 9.5e-27 125.9 540 28.7
Dinv43153 Davidia involucrata HOM05D002515 ORTHO05D002722 9.5e-27 125.9 540 28.7
Psat6g048200 Pisum sativum HOM05D002515 ORTHO05D002722 9.5e-27 125.9 528 29.9
COL.COLO4_14800 Corchorus olitorius HOM05D002515 ORTHO05D002722 2.1e-26 124.8 659 28.4
FAN25G0844 Fragaria x ananassa HOM05D002515 ORTHO05D002722 4.7e-26 123.6 544 28.5
Haze_24092 Corylus avellana HOM05D002515 ORTHO05D002722 6.2e-26 123.2 507 28.4
Manes.11G128400 Manihot esculenta HOM05D002515 ORTHO05D002722 6.2e-26 123.2 531 27.1
BcaC06g31985 Brassica carinata HOM05D002515 ORTHO05D002722 8.1e-26 122.9 571 27.0
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 8.1e-26 122.9 602 27.2
Potri.001G239500 Populus trichocarpa HOM05D002515 ORTHO05D002722 1.4e-25 122.1 596 25.3
Prupe.6G078200 Prunus persica HOM05D002515 ORTHO05D002722 1.4e-25 122.1 589 27.0
Oeu011404.1 Olea europaea HOM05D002515 ORTHO05D002722 6.8e-25 119.8 195 44.6
AT5G02390 Arabidopsis thaliana HOM05D002515 ORTHO05D002722 8.9e-25 119.4 647 26.7
AUR62041766 Chenopodium quinoa HOM05D002515 ORTHO05D002722 8.9e-25 119.4 451 31.5
Gohir.A05G095700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 8.9e-25 119.4 560 25.7
GSVIVG01024972001 Vitis vinifera HOM05D002515 ORTHO05D002722 1.2e-24 119.0 598 26.1
C09p74180 Brassica napus HOM05D002515 ORTHO05D002722 1.5e-24 118.6 604 26.5
BolC9t60151H Brassica oleracea HOM05D002515 ORTHO05D002722 1.5e-24 118.6 604 26.5
BraA10t45358Z Brassica rapa HOM05D002515 ORTHO05D002722 1.5e-24 118.6 633 26.7
TWI79G0006 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 1.5e-24 118.6 512 26.6
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 2.0e-24 118.2 554 26.5
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 2.0e-24 118.2 524 27.3
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 9.8e-24 115.9 505 29.7
Glyma.20G077800 Glycine max HOM05D002515 ORTHO05D002722 1.3e-23 115.5 490 25.9
Gorai.009G099300 Gossypium raimondii HOM05D002515 ORTHO05D002722 2.2e-23 114.8 551 25.6
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 3.7e-23 114.0 533 27.2
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 3.7e-23 114.0 533 27.2
FAN16G3741 Fragaria x ananassa HOM05D002515 ORTHO05D002722 4.9e-23 113.6 475 28.8
FAN21G0377 Fragaria x ananassa HOM05D002515 ORTHO05D006653 4.9e-23 113.6 471 28.2
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 1.9e-22 111.7 617 25.3
Duzib150G0343 Durio zibethinus HOM05D002515 ORTHO05D002722 2.4e-22 111.3 590 25.1
Atru.chr3.3898 Acer truncatum HOM05D002515 ORTHO05D002722 5.4e-22 110.2 523 24.5
FAN11G3380 Fragaria x ananassa HOM05D002515 ORTHO05D002722 5.4e-22 110.2 478 27.8
CDE04G3739 Ceratophyllum demersum HOM05D002515 ORTHO05D002722 9.2e-22 109.4 511 26.2
A03p00660 Brassica napus HOM05D002515 ORTHO05D002722 6.0e-21 106.7 603 25.7
Sabra16G0144400 Salix brachista HOM05D002515 ORTHO05D002722 3.0e-20 104.4 608 24.3
Ca_20526_v3 Cicer arietinum L. HOM05D002515 ORTHO05D002722 4.3e-19 100.5 419 27.9
Ca_30765_v3 Cicer arietinum L. HOM05D002515 ORTHO05D002722 4.3e-19 100.5 419 27.9
Lalb_Chr07g0193901 Lupinus albus HOM05D002515 ORTHO05D002722 1.2e-18 99.0 515 24.9
CSS0030774 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.1e-18 98.2 510 27.1
CDE07G1359 Ceratophyllum demersum HOM05D002515 ORTHO05D002722 2.8e-18 97.8 510 24.9
Ciclev10027797m.g Citrus clementina HOM05D002515 ORTHO05D002722 3.6e-18 97.4 590 25.6
Potri.009G030700 Populus trichocarpa HOM05D002515 ORTHO05D002722 3.6e-18 97.4 600 24.8
CANSAT54G1460 Cannabis sativa HOM05D002515 ORTHO05D002722 4.7e-18 97.1 498 24.3
FvH4_3g36010 Fragaria vesca HOM05D002515 ORTHO05D002722 8.1e-18 96.3 365 28.5
CSS0020060 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.1e-17 95.9 511 26.8
Thecc.09G300700 Theobroma cacao HOM05D002515 ORTHO05D002722 1.1e-17 95.9 587 23.9
Thecc.09G322100 Theobroma cacao HOM05D002515 ORTHO05D002722 4.0e-17 94.0 583 23.5
Lj3g0010198 Lotus japonicus HOM05D002515 ORTHO05D002722 8.9e-17 92.8 550 27.6
Gohir.D05G096000 Gossypium hirsutum HOM05D002515 ORTHO05D002722 1.2e-16 92.4 557 24.8
Eucgr.K03137 Eucalyptus grandis HOM05D002515 ORTHO05D002722 5.8e-16 90.1 269 31.6
Cpa.g.sc81.155 Carica papaya HOM05D002515 ORTHO05D002722 1.7e-15 88.6 545 25.0
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 2.2e-15 88.2 586 23.7
Glyma.03G082500 Glycine max HOM05D002515 ORTHO05D002722 2.2e-15 88.2 290 28.6
Lsat_1_v5_gn_8_109380 Lactuca sativa HOM05D002515 ORTHO05D002722 1.9e-14 85.1 597 27.0
RcHm_v2.0_Chr5g0064421 Rosa chinensis HOM05D002515 ORTHO05D002722 1.9e-14 85.1 344 28.2
HPP92_000806 Vanilla planifolia HOM05D002515 ORTHO05D002722 1.9e-14 85.1 426 26.3
TAR362G0676 Trochodendron aralioides HOM05D002515 ORTHO05D002722 3.2e-14 84.3 133 45.1
vmacro03074 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 5.4e-14 83.6 549 25.1
VMungo0331G1811 Vigna mungo HOM05D002515 ORTHO05D002722 1.2e-13 82.4 390 27.9
COL.COLO4_18507 Corchorus olitorius HOM05D002515 ORTHO05D002722 4.6e-13 80.5 585 24.3
Nitab4.5_0003753g0020 Nicotiana tabacum HOM05D002515 ORTHO05D002722 7.8e-13 79.7 572 24.8
HPP92_006613 Vanilla planifolia HOM05D005124 ORTHO05D005914 3.0e-12 77.8 596 23.8
CsaV3_6G016870 Cucumis sativus L. HOM05D002515 ORTHO05D002722 3.9e-12 77.4 419 23.2
ClCG02G020160 Citrullus lanatus HOM05D002515 ORTHO05D002722 1.9e-11 75.1 471 22.5
Nitab4.5_0004156g0040 Nicotiana tabacum HOM05D002515 ORTHO05D002722 2.5e-11 74.7 467 24.0
Sabra09G0021700 Salix brachista HOM05D002515 ORTHO05D002722 7.3e-11 73.2 494 24.7
DCAR_005973 Daucus carota HOM05D002515 ORTHO05D002722 9.6e-11 72.8 615 22.0
HPP92_019199 Vanilla planifolia HOM05D002515 ORTHO05D002722 9.6e-11 72.8 506 23.7
Os12g0570500 Oryza sativa ssp. japonica HOM05D002515 ORTHO05D002722 1.2e-10 72.4 492 24.8
Phvul.L005343 Phaseolus vulgaris HOM05D002515 ORTHO05D002722 1.2e-10 72.4 508 24.2
arahy.Tifrunner.gnm1.ann1.D53E9A Arachis hypogaea HOM05D002515 ORTHO05D002722 1.6e-10 72.0 483 24.6
Zm00001eb029260 Zea mays HOM05D002515 ORTHO05D002722 2.1e-10 71.6 401 26.9
Lj2A1062T48 Lonicera japonica HOM05D002515 ORTHO05D002722 2.8e-10 71.2 489 26.2
arahy.Tifrunner.gnm1.ann1.WWI603 Arachis hypogaea HOM05D002515 ORTHO05D002722 4.7e-10 70.5 485 24.9
DCAR_005334 Daucus carota HOM05D002515 ORTHO05D002722 4.7e-10 70.5 592 24.7
CsaV3_4G031780 Cucumis sativus L. HOM05D002515 ORTHO05D002722 1.8e-09 68.6 382 22.3
Cc01_g12840 Coffea canephora HOM05D002515 ORTHO05D002722 2.4e-09 68.2 560 22.9
HPP92_019190 Vanilla planifolia HOM05D002515 ORTHO05D002722 5.2e-09 67.0 481 23.5
Glyma.13G335900 Glycine max HOM05D002515 ORTHO05D002722 1.2e-08 65.9 506 24.9
Glyma.15G038400 Glycine max HOM05D002515 ORTHO05D002722 1.5e-08 65.5 504 25.0
Dinv42947 Davidia involucrata HOM05D002515 ORTHO05D002722 4.4e-08 63.9 427 26.2
Lj3g0026583 Lotus japonicus HOM05D002515 ORTHO05D002722 4.4e-08 63.9 560 22.1
Actinidia07036 Actinidia chinensis HOM05D002515 ORTHO05D002722 5.8e-08 63.5 357 24.4
Eucgr.J02056 Eucalyptus grandis HOM05D002515 ORTHO05D002722 5.8e-08 63.5 482 23.7
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 7.6e-08 63.2 529 20.4
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 1.3e-07 62.4 636 21.5
MELO3C025918.2 Cucumis melo HOM05D002515 ORTHO05D002722 1.3e-07 62.4 421 21.9
Psat7g237000 Pisum sativum HOM05D002515 ORTHO05D002722 4.9e-07 60.5 333 24.3
TAR362G1002 Trochodendron aralioides HOM05D002515 ORTHO05D002722 6.4e-07 60.1 63 44.4
Ah.12g062380 Amaranthus hybridus HOM05D002515 ORTHO05D002722 1.1e-06 59.3 439 25.7
TAR636G0721 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.4e-06 58.9 52 44.2
TAR636G1669 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.4e-06 58.9 164 37.2
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 2.4e-06 58.2 346 24.6
TPR.G34265 Trifolium pratense HOM05D002515 ORTHO05D002722 3.2e-06 57.8 356 25.8
Actinidia37204 Actinidia chinensis HOM05D002515 ORTHO05D002722 5.4e-06 57.0 494 23.3


User provided reference genes

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