Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 0.0e+00 1328.9 670 100.0
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.7e-309 1065.4 670 82.1
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 5.8e-257 891.0 697 65.7
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.4e-250 869.8 700 65.6
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.0e-249 865.9 696 65.4
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 3.8e-248 861.7 705 64.1
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 3.9e-245 851.7 690 63.6
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.1e-236 823.5 702 61.7
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 4.0e-234 815.1 698 61.5
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 1.1e-231 807.0 663 62.7
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.4e-231 806.6 725 60.7
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.2e-230 803.5 706 62.7
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 3.0e-229 798.9 695 61.0
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.1e-228 797.0 695 61.0
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.9e-228 796.2 694 60.8
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 8.2e-227 790.8 672 62.5
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.3e-226 788.1 700 58.6
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 5.3e-226 788.1 705 58.7
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 5.0e-224 781.6 703 59.9
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 5.0e-224 781.6 671 61.8
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 8.5e-224 780.8 702 58.8
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.1e-223 780.4 695 59.7
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 6.1e-222 774.6 708 59.0
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.1e-220 770.4 699 56.8
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.3e-220 768.8 704 58.8
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.7e-219 766.5 703 57.3
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 2.2e-219 766.1 699 57.9
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 3.7e-219 765.4 701 57.3
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.7e-219 765.4 703 57.2
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 4.8e-219 765.0 699 57.5
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 9.1e-218 760.8 678 58.4
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 7.7e-217 757.7 673 58.7
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.7e-216 756.5 700 57.1
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.7e-216 756.5 702 57.7
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 3.8e-216 755.4 701 57.5
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 5.5e-215 751.5 698 58.3
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 6.1e-214 748.0 701 56.5
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.3e-212 742.3 703 56.2
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 5.7e-212 741.5 703 57.5
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 6.3e-211 738.0 701 54.8
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.1e-210 737.3 697 55.7
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 3.1e-210 735.7 633 61.0
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 4.1e-210 735.3 701 54.6
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 5.3e-210 734.9 699 57.7
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 4.5e-209 731.9 721 55.3
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 1.0e-208 730.7 697 55.1
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.2e-208 729.6 666 57.4
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 6.5e-208 728.0 697 55.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 5.5e-207 724.9 692 56.5
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 9.4e-207 724.2 700 54.7
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.1e-206 723.0 700 54.7
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 3.6e-206 722.2 674 55.9
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 6.1e-206 721.5 697 55.2
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.0e-205 720.7 686 55.1
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.8e-205 719.9 704 55.7
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 6.7e-205 718.0 700 54.4
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.1e-204 717.2 681 55.4
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 1.5e-204 716.8 700 54.3
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 2.0e-204 716.5 672 56.0
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 2.0e-204 716.5 668 55.8
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 5.7e-204 714.9 701 55.1
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 7.4e-204 714.5 701 55.5
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 9.7e-204 714.1 674 55.6
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.3e-203 713.8 699 55.1
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.3e-203 713.8 690 55.8
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.7e-203 713.4 694 54.9
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 2.8e-203 712.6 687 55.3
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 3.7e-203 712.2 672 55.5
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 4.8e-203 711.8 697 55.8
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.3e-203 711.4 704 54.4
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 6.3e-203 711.4 700 54.6
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 6.3e-203 711.4 702 54.7
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 8.2e-203 711.1 667 56.8
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 2.4e-202 709.5 687 55.5
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 3.1e-202 709.1 689 54.7
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 4.1e-202 708.8 674 56.7
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 7.0e-202 708.0 646 58.2
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 7.0e-202 708.0 672 56.4
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 4.5e-201 705.3 679 55.8
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.5e-201 705.3 707 53.6
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 5.9e-201 704.9 680 54.3
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.0e-200 704.1 665 55.2
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.7e-200 703.4 656 56.7
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 2.9e-200 702.6 703 53.5
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 2.9e-200 702.6 656 56.6
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.9e-200 702.6 706 54.7
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 5.0e-200 701.8 680 55.1
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 2.5e-199 699.5 681 55.4
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 9.4e-199 697.6 656 56.6
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 1.4e-197 693.7 637 57.5
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 5.2e-197 691.8 670 54.8
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 4.8e-195 685.3 692 52.9
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 1.5e-188 663.7 696 50.6
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 5.9e-185 651.7 700 50.6
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 1.3e-184 650.6 618 55.2
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 3.8e-184 649.0 684 50.0
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 5.2e-181 638.6 619 54.8
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 6.4e-179 631.7 618 54.9
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 6.4e-171 605.1 643 51.0
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.6e-161 573.9 598 51.5
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 4.3e-159 565.8 582 51.0
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 6.0e-153 545.4 622 48.2
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.1e-151 541.2 499 55.3
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.4e-141 507.7 733 42.2
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 1.3e-139 501.1 421 59.4
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.0e-137 492.3 608 45.6
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.0e-136 490.0 665 45.7
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 8.1e-134 481.9 526 51.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.9e-123 446.8 612 45.1
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.9e-120 436.4 486 47.7
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 1.4e-114 417.9 666 39.2
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 2.3e-104 384.0 832 32.6
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 7.4e-95 352.4 425 50.1
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.0e-91 339.7 199 77.9
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 2.9e-83 313.9 393 45.8
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 4.2e-82 310.1 553 36.5
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.2e-68 265.4 315 49.5
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.4e-64 251.9 636 31.3
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.9e-59 233.8 318 43.4
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.5e-55 221.9 253 48.6
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.1e-50 205.7 420 37.9
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 9.5e-50 202.6 652 28.5
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.3e-48 198.0 679 28.1
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.3e-46 189.5 368 37.0
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.4e-45 188.7 718 26.5
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.9e-45 188.3 272 42.6
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 3.6e-41 174.1 305 40.0
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 3.6e-41 174.1 136 67.6
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 3.1e-40 171.0 222 42.3
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 2.9e-38 164.5 175 54.3
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.3e-34 149.8 277 36.5
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 9.6e-34 149.4 114 59.6
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 6.9e-32 143.3 157 49.0
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 2.0e-31 141.7 125 60.8
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 4.2e-29 134.0 109 67.9
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.7e-28 131.3 216 38.4
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.8e-28 129.8 216 38.0
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 7.8e-28 129.8 216 38.0
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.8e-28 129.8 216 38.0
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.8e-28 129.8 216 38.0
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.0e-27 129.4 135 47.4
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.2e-25 120.2 224 32.6
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 2.0e-23 115.2 168 41.1
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.0e-23 115.2 162 42.0
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.5e-23 114.0 162 41.4
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 7.6e-23 113.2 162 41.4
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.9e-22 111.3 161 41.6
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 6.0e-20 103.6 84 69.0
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 5.1e-19 100.5 93 62.4
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 1.2e-12 79.3 73 52.1
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 1.2e-12 79.3 73 52.1
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.6e-12 79.0 223 32.7
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.8e-08 65.5 40 70.0
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 5.8e-07 60.5 140 38.6
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 8.4e-06 56.6 49 57.1


User provided reference genes

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