Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 9.4e-311 1069.3 529 100.0
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 1.8e-213 746.1 538 69.1
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 4.1e-213 745.0 542 68.8
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 9.1e-213 743.8 539 68.5
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 1.5e-212 743.0 541 68.6
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 3.2e-210 735.3 538 68.4
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.1e-209 732.6 540 68.5
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 2.7e-209 732.3 524 68.1
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.7e-209 732.3 545 66.8
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.4e-208 729.9 503 70.6
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.8e-208 729.6 533 67.5
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 2.0e-207 726.1 542 67.0
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 4.4e-207 724.9 504 70.2
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 6.3e-206 721.1 546 65.2
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 1.5e-204 716.5 547 66.7
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.6e-204 715.7 553 66.2
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 3.4e-204 715.3 536 66.0
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 4.5e-204 714.9 533 67.2
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 2.9e-203 712.2 540 66.9
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.8e-203 711.8 545 65.5
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 1.1e-202 710.3 546 65.0
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 1.9e-202 709.5 499 69.3
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 2.5e-202 709.1 545 65.5
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 2.5e-202 709.1 538 64.9
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.2e-202 708.4 511 68.3
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 5.5e-202 708.0 539 64.4
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 7.2e-202 707.6 517 67.5
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.7e-201 704.9 552 64.7
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.0e-200 703.7 558 64.0
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.8e-200 703.0 533 64.7
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 1.8e-200 703.0 505 65.7
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 1.1e-199 700.3 530 64.9
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.1e-199 700.3 499 69.7
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.0e-199 699.5 529 66.9
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 2.6e-199 699.1 519 68.6
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 5.7e-199 698.0 535 65.2
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 7.4e-199 697.6 533 64.9
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 2.8e-198 695.7 504 67.7
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 4.1e-197 691.8 504 65.7
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 4.1e-197 691.8 536 64.4
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 9.1e-197 690.6 510 64.3
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 1.2e-196 690.3 539 63.8
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 5.9e-196 688.0 534 63.5
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 7.7e-196 687.6 543 63.4
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 7.7e-196 687.6 506 65.8
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.0e-195 687.2 541 62.8
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.7e-195 686.4 533 62.5
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 3.2e-194 682.2 540 63.9
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 3.2e-194 682.2 536 63.6
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.2e-194 681.8 504 66.9
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 5.5e-194 681.4 534 63.7
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 5.5e-194 681.4 535 62.8
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 7.2e-194 681.0 532 63.0
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.6e-193 678.7 504 66.7
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 8.0e-193 677.6 504 66.3
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.0e-192 677.2 534 63.1
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.5e-191 673.3 477 69.6
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 2.0e-191 672.9 499 65.3
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 4.4e-191 671.8 507 63.7
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 7.5e-191 671.0 511 65.6
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 9.7e-191 670.6 398 84.2
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.1e-189 665.6 509 63.3
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 4.1e-189 665.2 537 63.1
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 9.1e-189 664.1 486 65.0
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 9.1e-189 664.1 533 61.9
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 2.7e-188 662.5 498 63.9
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 3.8e-187 658.7 497 64.2
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 5.0e-187 658.3 500 63.8
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 1.1e-186 657.1 518 62.5
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 5.5e-186 654.8 537 60.5
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.2e-186 654.4 530 60.9
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 3.6e-185 652.1 531 61.2
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.0e-184 649.0 503 63.6
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 3.0e-184 649.0 526 60.6
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 4.0e-184 648.7 514 62.8
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.2e-183 647.1 492 64.6
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 2.6e-183 646.0 534 60.5
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.8e-181 639.8 514 61.7
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 9.1e-181 637.5 507 62.5
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 3.5e-180 635.6 507 62.7
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 7.7e-180 634.4 522 63.0
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.0e-179 634.0 463 69.8
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 1.3e-179 633.6 417 74.8
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 6.1e-177 624.8 464 64.7
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 4.0e-176 622.1 476 64.1
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 1.5e-175 620.2 543 61.0
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 7.5e-175 617.8 481 62.6
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 1.4e-173 613.6 501 60.7
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 3.1e-173 612.5 503 60.6
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 2.3e-171 606.3 512 59.0
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 6.0e-164 581.6 420 68.3
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 6.0e-164 581.6 427 66.7
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 6.8e-160 568.2 490 58.8
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 8.3e-158 561.2 565 52.0
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.9e-157 560.1 381 72.4
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 8.1e-153 544.7 522 51.3
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.0e-151 540.0 417 65.5
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.9e-146 523.5 382 68.3
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.8e-144 515.0 525 50.1
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.8e-144 515.0 525 50.1
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 3.4e-143 512.7 438 59.1
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 9.2e-141 504.6 381 66.1
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.6e-140 503.8 472 53.2
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 2.7e-132 476.5 347 69.2
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 1.7e-126 457.2 541 50.6
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.9e-126 456.4 389 58.4
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.3e-125 451.4 482 52.1
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 8.4e-118 428.3 541 48.4
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 2.4e-117 426.8 533 45.8
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 1.2e-111 407.9 429 51.3
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 5.8e-111 405.6 285 68.4
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 4.7e-76 289.7 463 36.3
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.1e-72 278.5 241 59.3
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 2.5e-69 267.3 209 63.2
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 2.4e-56 224.2 189 60.3
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-53 214.5 205 55.6
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 3.9e-46 190.3 139 66.2
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 1.1e-40 172.2 173 53.2
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.2e-40 170.6 136 61.8
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.2e-40 170.6 127 61.4
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.1e-37 162.2 144 56.9
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 1.1e-35 155.6 142 56.3
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.2e-31 142.1 493 27.4
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 2.8e-28 131.0 107 63.6
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 2.8e-28 131.0 107 63.6
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 2.8e-28 131.0 107 63.6
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 8.9e-27 125.9 90 65.6
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 7.3e-21 106.3 124 50.8
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.8e-20 104.4 86 54.7
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 6.2e-20 103.2 77 63.6
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.2e-17 94.7 75 58.7
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.0e-10 71.6 286 27.3
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 3.8e-09 67.4 74 52.7
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 7.1e-08 63.2 314 24.8
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 4.6e-07 60.5 345 26.7
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 4.6e-07 60.5 311 25.1
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 7.9e-07 59.7 356 23.0
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.0e-06 59.3 319 26.0
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 3.9e-06 57.4 345 25.2
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 5.1e-06 57.0 355 26.2
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 5.1e-06 57.0 139 29.5
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 5.1e-06 57.0 319 25.4
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 8.7e-06 56.2 319 25.4
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 8.7e-06 56.2 319 25.4


User provided reference genes

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