Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 1.1e-29 132.5 59 100.0
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 4.2e-18 94.0 58 67.2
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 7.9e-17 89.7 54 72.2
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 1.8e-16 88.6 58 62.1
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.8e-16 88.6 53 69.8
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-16 88.2 55 65.5
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-16 88.2 55 65.5
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 3.0e-16 87.8 55 63.6
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 3.9e-16 87.4 58 62.1
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.9e-16 87.4 55 63.6
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 6.7e-16 86.7 56 66.1
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 6.7e-16 86.7 53 64.2
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 6.7e-16 86.7 53 66.0
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 8.8e-16 86.3 53 66.0
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 8.8e-16 86.3 53 67.9
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 8.8e-16 86.3 55 61.8
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 1.1e-15 85.9 55 61.8
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.9e-15 85.1 52 61.5
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.9e-15 85.1 55 61.8
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.5e-15 84.7 56 66.1
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 2.5e-15 84.7 53 66.0
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 3.3e-15 84.3 53 66.0
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 3.3e-15 84.3 53 66.0
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 3.3e-15 84.3 53 66.0
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.3e-15 84.3 54 64.8
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.3e-15 84.0 53 64.2
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 4.3e-15 84.0 58 58.6
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 5.7e-15 83.6 53 64.2
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 5.7e-15 83.6 52 65.4
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.7e-15 83.6 52 65.4
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.7e-15 83.6 52 65.4
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.7e-15 83.6 52 65.4
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 5.7e-15 83.6 53 64.2
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 5.7e-15 83.6 53 64.2
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 5.7e-15 83.6 52 65.4
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 7.4e-15 83.2 53 66.0
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 7.4e-15 83.2 55 63.6
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 7.4e-15 83.2 52 65.4
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 64.2
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 64.2
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 64.2
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 9.7e-15 82.8 55 63.6
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 62.3
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 64.2
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 64.2
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 9.7e-15 82.8 57 59.6
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 64.2
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 9.7e-15 82.8 53 64.2
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.3e-14 82.4 53 62.3
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.3e-14 82.4 53 62.3
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.3e-14 82.4 53 60.4
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.7e-14 82.0 55 61.8
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.2e-14 81.6 53 64.2
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.8e-14 81.3 53 62.3
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.7e-14 80.9 53 62.3
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.7e-14 80.9 53 62.3
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 4.8e-14 80.5 55 60.0
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 4.8e-14 80.5 53 64.2
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 4.8e-14 80.5 55 61.8
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 4.8e-14 80.5 55 61.8
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 4.8e-14 80.5 53 60.4
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 6.3e-14 80.1 49 69.4
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 6.3e-14 80.1 56 58.9
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 6.3e-14 80.1 55 58.2
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 6.3e-14 80.1 53 62.3
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 6.3e-14 80.1 53 62.3
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 8.2e-14 79.7 53 62.3
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 8.2e-14 79.7 53 60.4
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 8.2e-14 79.7 56 58.9
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 8.2e-14 79.7 53 62.3
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 8.2e-14 79.7 55 60.0
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 8.2e-14 79.7 54 63.0
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 8.2e-14 79.7 53 58.5
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 8.2e-14 79.7 53 62.3
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.1e-13 79.3 55 56.4
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.1e-13 79.3 60 55.0
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.1e-13 79.3 53 60.4
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.4e-13 79.0 53 64.2
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 1.8e-13 78.6 53 62.3
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.8e-13 78.6 52 61.5
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.4e-13 78.2 53 56.6
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 3.1e-13 77.8 53 60.4
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.1e-13 77.8 53 60.4
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.1e-13 77.8 53 60.4
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.1e-13 77.8 53 60.4
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 3.1e-13 77.8 53 60.4
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.1e-13 77.8 53 56.6
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 5.3e-13 77.0 53 60.4
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 5.3e-13 77.0 53 60.4
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.3e-13 77.0 53 60.4
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.3e-13 77.0 53 60.4
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 5.3e-13 77.0 53 60.4
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 5.3e-13 77.0 53 60.4
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 6.9e-13 76.6 61 52.5
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 6.9e-13 76.6 55 58.2
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 9.1e-13 76.3 53 58.5
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 9.1e-13 76.3 53 58.5
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 9.1e-13 76.3 54 59.3
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 9.1e-13 76.3 52 59.6
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.2e-12 75.9 53 56.6
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.2e-12 75.9 53 56.6
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 1.2e-12 75.9 56 57.1
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.5e-12 75.5 53 58.5
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.5e-12 75.5 53 54.7
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 1.5e-12 75.5 53 60.4
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 2.6e-12 74.7 53 60.4
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.4e-12 74.3 53 54.7
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 4.5e-12 73.9 53 56.6
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 7.7e-12 73.2 53 56.6
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.7e-11 72.0 56 55.4
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.7e-11 72.0 54 57.4
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.7e-11 72.0 53 56.6
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 2.2e-11 71.6 54 53.7
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 2.2e-11 71.6 52 55.8
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.9e-11 71.2 55 60.0
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 6.5e-11 70.1 60 53.3
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 6.5e-11 70.1 55 58.2
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 8.5e-11 69.7 44 65.9
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 8.5e-11 69.7 54 59.3
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 1.4e-10 68.9 59 52.5
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 3.2e-10 67.8 53 54.7
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.2e-09 65.9 48 56.2
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 4.7e-09 63.9 53 49.1
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 6.1e-09 63.5 39 64.1
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.7e-06 55.5 51 47.1
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 2.2e-06 55.1 29 75.9
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.2e-06 55.1 38 60.5


User provided reference genes

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