Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034850.1 Olea europaea HOM05D002320 ORTHO05D002428 4.0e-41 171.8 117 100.0
Lj9A551T50 Lonicera japonica HOM05D002320 ORTHO05D002428 2.8e-18 95.9 50 82.0
DCAR_025039 Daucus carota HOM05D002320 ORTHO05D002428 8.1e-18 94.4 50 82.0
Lalb_Chr19g0126261 Lupinus albus HOM05D002320 ORTHO05D002428 3.4e-16 89.0 50 76.0
Oeu032491.1 Olea europaea HOM05D002320 ORTHO05D002428 3.8e-15 85.5 50 74.0
AL1G35240 Arabidopsis lyrata HOM05D003354 ORTHO05D003786 7.1e-14 81.3 47 70.2
Lalb_Chr05g0220861 Lupinus albus HOM05D002320 ORTHO05D002428 2.1e-13 79.7 48 68.8
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 3.5e-13 79.0 43 79.1
BcaC07g38036 Brassica carinata HOM05D002320 ORTHO05D002428 1.0e-12 77.4 43 72.1
Ca_14792_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 1.3e-12 77.0 50 64.0
arahy.Tifrunner.gnm1.ann1.GIYH3D Arachis hypogaea HOM05D002320 ORTHO05D002428 2.3e-12 76.3 45 68.9
BcaNung00120 Brassica carinata HOM05D002095 ORTHO05D002058 6.7e-12 74.7 43 67.4
TPR.G28182 Trifolium pratense HOM05D002320 ORTHO05D002428 4.8e-10 68.6 50 60.0
C06p51660 Brassica napus HOM05D003354 ORTHO05D003786 4.0e-09 65.5 39 64.1
unitig_0.g1334 Utricularia gibba HOM05D002320 ORTHO05D002428 4.0e-09 65.5 117 36.8
BcaB03g15937 Brassica carinata HOM05D003354 ORTHO05D003786 9.0e-09 64.3 47 55.3
Prupe.5G052900 Prunus persica HOM05D002320 ORTHO05D002428 2.2e-07 59.7 37 70.3
BcaC08g47598 Brassica carinata HOM05D003354 ORTHO05D003786 3.8e-07 58.9 39 61.5
BolC6t40185H Brassica oleracea HOM05D003354 ORTHO05D003786 3.8e-07 58.9 39 61.5
BolC6t40188H Brassica oleracea HOM05D003354 ORTHO05D003786 3.8e-07 58.9 39 61.5
AL2G37860 Arabidopsis lyrata HOM05D003354 ORTHO05D003786 4.9e-07 58.5 38 60.5
GSVIVG01018327001 Vitis vinifera HOM05D002320 ORTHO05D002428 3.2e-06 55.8 26 88.5
AL6G53550 Arabidopsis lyrata HOM05D002320 ORTHO05D002428 4.2e-06 55.5 49 51.0
Actinidia05782 Actinidia chinensis HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
MSTRG.20668 Avicennia marina HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Cfa011036 Carpinus fangiana HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
CiPaw.13G023000 Carya illinoinensis HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
CiPaw.14G017800 Carya illinoinensis HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Cc02_g25440 Coffea canephora HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
COL.COLO4_12365 Corchorus olitorius HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Haze_02889 Corylus avellana HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Dinv43597 Davidia involucrata HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Duzib133G1189 Durio zibethinus HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Duzib138G0483 Durio zibethinus HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Migut.B01501 Erythranthe guttata HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Gohir.A08G140100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Gohir.D08G161100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Gorai.004G167400 Gossypium raimondii HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Gorai.008G110800 Gossypium raimondii HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
MD07G1094800 Malus domestica HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Nitab4.5_0000563g0100 Nicotiana tabacum HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Nitab4.5_0002341g0040 Nicotiana tabacum HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Oeu037425.1 Olea europaea HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Oeu037426.1 Olea europaea HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Peaxi162Scf00793g00346 Petunia axillaris HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Rhsim07G0038400 Rhododendron simsii HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Sabra02G0109300 Salix brachista HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
SalBow5G1443 Salvia bowleyana HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Hund17117 Selenicereus undatus HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Sc26g0001690 Simmondsia chinensis HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
THA.LOC104814106 Tarenaya hassleriana HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
vmacro13526 Vaccinium macrocarpon HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
arahy.Tifrunner.gnm1.ann1.7MRV43 Arachis hypogaea HOM05D002320 ORTHO05D002428 9.3e-06 54.3 38 60.5
arahy.Tifrunner.gnm1.ann1.PM0Q6H Arachis hypogaea HOM05D002320 ORTHO05D002428 9.3e-06 54.3 38 60.5
ClCG06G008100 Citrullus lanatus HOM05D002320 ORTHO05D002428 9.3e-06 54.3 24 87.5
MELO3C020368.2 Cucumis melo HOM05D002320 ORTHO05D002428 9.3e-06 54.3 24 87.5
CsaV3_2G011090 Cucumis sativus L. HOM05D002320 ORTHO05D002428 9.3e-06 54.3 24 87.5
Lj7C550G3 Lonicera japonica HOM05D002320 ORTHO05D002428 9.3e-06 54.3 24 87.5
Potri.002G140000 Populus trichocarpa HOM05D002320 ORTHO05D002428 9.3e-06 54.3 24 87.5
Sed0019875 Sechium edule HOM05D002320 ORTHO05D002428 9.3e-06 54.3 24 87.5


User provided reference genes

Program Settings