Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 0.0e+00 1598.6 800 100.0
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.4e-278 963.0 801 61.2
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.1e-265 920.2 757 61.2
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.7e-263 912.9 754 61.5
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 7.2e-262 907.5 793 59.0
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 3.1e-257 892.1 758 59.6
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 9.1e-257 890.6 763 60.0
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 9.1e-257 890.6 763 59.0
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 5.9e-256 887.9 760 59.5
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.9e-256 887.9 794 59.3
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.2e-253 880.2 804 56.7
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.1e-253 879.4 761 58.6
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 8.8e-252 874.0 761 58.5
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 8.8e-252 874.0 757 58.1
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 9.7e-251 870.5 798 56.6
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.4e-249 865.9 759 57.8
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 5.0e-247 858.2 760 57.1
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 6.5e-247 857.8 759 56.8
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 6.5e-247 857.8 759 57.7
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.1e-243 847.0 800 55.4
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 4.8e-242 841.6 759 56.4
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 2.4e-241 839.3 604 68.0
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 3.1e-241 839.0 762 56.4
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 5.3e-241 838.2 762 56.7
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 5.3e-241 838.2 760 56.1
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 7.0e-241 837.8 719 59.4
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.6e-240 836.6 766 56.7
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.0e-240 836.3 766 56.7
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.5e-240 835.5 790 56.2
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 6.5e-239 831.2 765 56.6
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 8.5e-239 830.9 763 57.1
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.5e-238 830.1 757 56.7
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.5e-238 830.1 758 55.9
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 4.2e-238 828.6 758 56.6
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.4e-238 827.4 756 58.7
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.4e-236 823.5 763 56.1
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.4e-236 823.5 817 52.5
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 6.7e-236 821.2 757 55.5
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 7.5e-235 817.8 761 55.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 2.8e-234 815.8 754 56.0
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 3.7e-234 815.5 765 54.8
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 5.3e-233 811.6 759 54.8
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.2e-232 810.4 761 54.5
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.6e-232 810.1 760 55.0
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 2.0e-232 809.7 796 52.3
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 1.0e-231 807.4 759 55.9
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.7e-231 806.6 755 54.6
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.7e-231 806.6 629 62.5
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.1e-230 803.9 754 55.4
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 4.2e-230 802.0 805 51.2
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 6.1e-229 798.1 757 54.8
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 8.0e-229 797.7 760 55.8
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.2e-227 793.9 760 54.1
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.0e-227 793.1 760 54.5
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.0e-227 793.1 758 54.2
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 4.8e-226 788.5 762 52.9
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.1e-225 787.3 754 54.6
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.6e-221 773.5 759 53.1
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.1e-221 773.1 755 53.2
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.8e-221 772.7 724 55.2
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 6.1e-221 771.5 651 60.5
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 2.3e-220 769.6 777 52.3
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.0e-220 769.2 755 54.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.5e-219 766.9 765 52.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.3e-218 763.8 761 52.7
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 8.3e-218 761.1 750 52.5
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 5.4e-217 758.4 751 51.1
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 7.8e-216 754.6 735 52.4
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 1.7e-215 753.4 809 49.3
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.8e-215 752.3 763 52.7
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 6.6e-215 751.5 763 52.8
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 1.2e-213 747.3 762 52.6
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.8e-212 743.4 812 49.1
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.0e-212 742.7 763 51.6
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 7.5e-211 738.0 762 51.2
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 3.7e-210 735.7 763 51.5
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 8.3e-210 734.6 748 51.9
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 7.0e-209 731.5 761 51.1
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 6.6e-207 724.9 746 51.3
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.6e-207 724.5 822 49.3
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 8.6e-207 724.5 674 55.6
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 2.5e-206 723.0 749 51.3
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.1e-204 717.6 762 50.1
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 3.1e-204 716.1 762 50.1
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 7.5e-203 711.4 764 50.3
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.7e-202 710.3 764 50.0
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 7.0e-201 704.9 757 49.5
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 9.2e-193 677.9 774 47.5
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.2e-189 665.2 771 46.2
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.5e-187 660.6 753 48.6
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 8.4e-186 654.8 771 45.1
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.7e-183 647.1 754 46.0
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.8e-181 639.8 550 58.9
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 2.0e-179 633.6 647 54.1
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 7.1e-169 598.6 747 46.5
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.9e-166 590.5 635 50.4
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.6e-163 578.6 768 41.3
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 9.0e-148 528.5 532 52.6
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 8.2e-125 452.2 564 46.1
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 8.5e-122 442.2 453 52.1
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.3e-117 428.3 794 33.0
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.4e-116 424.1 364 56.3
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.2e-114 417.5 421 52.7
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 2.0e-110 404.4 726 35.8
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.1e-108 398.7 676 36.8
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 3.6e-104 383.6 749 32.0
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.5e-102 378.3 736 34.0
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 6.3e-101 372.9 824 32.5
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.3e-97 360.1 813 30.8
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.4e-92 344.4 812 31.4
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.3e-87 327.8 338 49.4
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 2.5e-73 281.2 333 47.7
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.3e-73 280.8 284 55.6
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.0e-62 245.0 558 31.2
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 4.2e-52 210.7 189 53.4
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.5e-51 207.6 314 40.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 3.8e-45 187.6 168 51.2
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.5e-44 184.9 197 49.2
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 4.2e-44 184.1 176 57.4
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.8e-42 178.7 239 42.7
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.3e-37 162.5 484 28.7
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 2.5e-28 131.7 126 54.0
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.8e-23 115.5 189 32.3
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.6e-22 111.7 75 65.3
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.5e-20 105.1 71 63.4
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.2e-19 102.8 71 60.6
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.0e-17 95.5 102 45.1
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 2.5e-12 78.6 51 66.7
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.0e-09 68.9 330 23.0
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 6.3e-08 63.9 88 44.3
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 5.3e-07 60.8 132 34.1
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 5.9e-06 57.4 35 68.6
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 5.9e-06 57.4 58 48.3
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 5.9e-06 57.4 42 66.7


User provided reference genes

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