Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 1.1e-170 603.2 301 100.0
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 2.0e-68 263.5 289 54.7
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 3.8e-67 259.2 270 54.8
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 5.0e-67 258.8 286 54.9
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 6.6e-67 258.5 267 57.3
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 9.5e-66 254.6 314 49.7
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 2.3e-64 250.0 264 53.0
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 1.2e-63 247.7 257 52.5
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 7.5e-63 245.0 310 47.1
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 2.9e-62 243.0 313 47.0
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 4.9e-62 242.3 319 45.5
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 6.4e-62 241.9 319 45.5
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.1e-61 241.1 275 49.1
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 1.1e-61 241.1 268 50.4
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.9e-61 240.4 256 52.3
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.9e-61 240.4 256 52.3
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 1.9e-61 240.4 256 52.3
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 2.4e-61 240.0 270 50.0
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 3.2e-61 239.6 275 49.1
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 4.1e-61 239.2 275 47.6
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 7.0e-61 238.4 276 48.2
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 7.0e-61 238.4 319 44.5
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 4.6e-60 235.7 307 45.6
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 4.6e-60 235.7 277 47.3
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 7.8e-60 235.0 257 51.4
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.3e-59 234.2 283 48.1
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 3.0e-59 233.0 263 47.9
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 6.6e-59 231.9 279 49.8
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 6.6e-59 231.9 307 45.9
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 1.1e-58 231.1 264 48.9
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 1.5e-58 230.7 321 42.4
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.5e-58 230.7 275 48.4
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 3.3e-58 229.6 282 49.3
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 4.3e-58 229.2 270 47.8
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 7.3e-58 228.4 259 51.7
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 7.3e-58 228.4 318 44.7
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 9.5e-58 228.0 318 44.7
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 4.7e-57 225.7 244 50.0
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-56 224.6 277 46.2
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 1.1e-56 224.6 278 48.6
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 1.1e-56 224.6 277 48.4
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 1.8e-56 223.8 287 44.6
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 2.3e-56 223.4 291 47.8
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 4.0e-56 222.6 277 48.4
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 4.0e-56 222.6 288 45.1
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 2.0e-55 220.3 296 44.9
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 2.0e-55 220.3 296 44.9
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 2.6e-55 219.9 296 44.6
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 4.4e-55 219.2 296 44.9
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 7.5e-55 218.4 295 43.4
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 9.8e-55 218.0 267 44.6
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 1.3e-54 217.6 296 44.6
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 2.9e-54 216.5 307 42.0
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 3.7e-54 216.1 276 46.0
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 3.7e-54 216.1 295 42.7
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.7e-54 216.1 277 44.0
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 6.4e-54 215.3 264 47.3
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 1.1e-53 214.5 296 43.6
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 1.4e-53 214.2 309 42.7
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 1.4e-53 214.2 274 44.5
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 1.9e-53 213.8 285 43.5
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 1.9e-53 213.8 285 43.5
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 3.2e-53 213.0 273 46.5
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 3.2e-53 213.0 310 42.6
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 3.2e-53 213.0 291 45.4
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 4.1e-53 212.6 286 45.1
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 5.4e-53 212.2 307 41.4
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 7.0e-53 211.8 264 43.9
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 7.0e-53 211.8 279 45.2
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.2e-52 211.1 307 41.4
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 2.1e-52 210.3 306 41.2
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 2.7e-52 209.9 283 42.8
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 3.5e-52 209.5 279 44.8
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 4.6e-52 209.1 284 44.7
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 6.0e-52 208.8 263 45.2
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 7.8e-52 208.4 265 44.2
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 7.8e-52 208.4 288 43.8
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 3.9e-51 206.1 259 43.6
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 5.1e-51 205.7 266 45.1
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 6.6e-51 205.3 276 42.4
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 8.6e-51 204.9 261 43.7
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 8.6e-51 204.9 261 44.4
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 1.1e-50 204.5 261 43.7
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.1e-50 204.5 265 43.4
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 1.1e-50 204.5 273 43.6
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 1.1e-50 204.5 285 44.2
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 1.9e-50 203.8 256 44.9
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 1.9e-50 203.8 269 43.9
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 2.5e-50 203.4 303 42.6
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 3.3e-50 203.0 293 43.7
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 4.3e-50 202.6 265 42.6
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 9.5e-50 201.4 296 42.2
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 1.2e-49 201.1 283 44.5
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 2.8e-49 199.9 291 44.0
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 4.7e-49 199.1 251 47.0
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 4.7e-49 199.1 303 38.9
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 6.2e-49 198.7 293 42.7
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 6.2e-49 198.7 294 39.8
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 6.2e-49 198.7 292 40.8
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 8.1e-49 198.4 278 43.2
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 1.1e-48 198.0 292 41.1
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 2.3e-48 196.8 288 42.0
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 5.2e-48 195.7 277 40.4
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 8.9e-48 194.9 245 43.7
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.5e-47 194.1 256 44.9
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 1.5e-47 194.1 288 41.0
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 2.0e-47 193.7 269 41.3
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 5.8e-47 192.2 300 39.0
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 7.5e-47 191.8 280 40.7
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 4.9e-46 189.1 255 42.7
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 4.9e-46 189.1 255 42.7
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 4.9e-46 189.1 294 40.8
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 8.3e-46 188.3 276 43.1
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.9e-45 187.2 255 43.5
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 2.4e-45 186.8 278 39.2
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 5.4e-45 185.7 305 39.0
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 5.4e-45 185.7 270 41.9
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 7.1e-45 185.3 277 39.4
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 7.1e-45 185.3 252 40.5
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 9.2e-45 184.9 250 40.8
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 9.2e-45 184.9 299 38.5
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 2.7e-44 183.3 281 40.6
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 4.6e-44 182.6 254 40.2
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 7.8e-44 181.8 270 41.5
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 7.8e-44 181.8 202 48.5
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 5.1e-43 179.1 278 42.4
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 6.6e-43 178.7 281 42.3
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 1.2e-41 174.5 283 39.9
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 1.6e-41 174.1 283 39.9
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 6.2e-41 172.2 290 35.9
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-40 171.4 241 39.4
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 5.2e-40 169.1 261 40.2
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 2.0e-39 167.2 246 38.2
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.4e-39 166.4 231 45.0
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 4.4e-39 166.0 261 40.2
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 5.8e-39 165.6 271 38.7
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 2.9e-38 163.3 176 44.9
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 2.9e-38 163.3 146 55.5
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 6.4e-38 162.2 313 35.5
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 8.4e-38 161.8 280 36.8
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 1.9e-37 160.6 241 38.6
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 2.1e-36 157.1 133 55.6
COL.COLO4_22901 Corchorus olitorius HOM05D003493 ORTHO05D003980 3.3e-34 149.8 206 44.2
QL10p036801 Quercus lobata HOM05D003493 ORTHO05D003980 7.8e-28 128.6 204 41.2
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 3.0e-27 126.7 285 32.3
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 6.6e-27 125.6 256 34.4
Cpa.g.sc829.1 Carica papaya HOM05D003493 ORTHO05D003980 2.5e-26 123.6 219 39.3
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 9.6e-26 121.7 183 42.6
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 3.6e-25 119.8 247 32.4
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 4.0e-24 116.3 63 85.7
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 1.3e-22 111.3 292 29.1
QL10p035447 Quercus lobata HOM05D003493 ORTHO05D003980 2.1e-20 104.0 187 38.5
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.7e-19 98.6 93 40.9
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 4.3e-18 96.3 69 60.9
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 5.6e-18 95.9 74 58.1
Cpa.g.c34760 Carica papaya HOM05D003493 ORTHO05D003980 7.4e-18 95.5 59 66.1
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 7.4e-18 95.5 139 37.4
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 9.6e-18 95.1 198 34.8
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 9.6e-18 95.1 161 31.7
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 1.3e-17 94.7 59 64.4
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 3.1e-16 90.1 126 33.3
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 3.4e-15 86.7 71 56.3
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 5.8e-15 85.9 69 56.5
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 7.6e-15 85.5 69 56.5
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 9.9e-15 85.1 339 22.7
arahy.Tifrunner.gnm1.ann1.XN9UYN Arachis hypogaea HOM05D003493 ORTHO05D003980 1.7e-14 84.3 237 28.7
arahy.Tifrunner.gnm1.ann1.PE1W7W Arachis hypogaea HOM05D003493 ORTHO05D003980 7.1e-13 79.0 237 27.8
BcaC07g41355 Brassica carinata HOM05D003493 ORTHO05D003980 1.8e-11 74.3 102 47.1
Ca_25290_v3 Cicer arietinum L. HOM05D003493 ORTHO05D015411 2.5e-10 70.5 42 71.4


User provided reference genes

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