Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 9.7e-149 530.4 325 100.0
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 2.4e-75 286.6 366 60.4
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 2.4e-75 286.6 359 60.2
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 2.1e-74 283.5 349 60.7
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 6.6e-73 278.5 352 58.5
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 2.1e-71 273.5 341 57.8
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 1.2e-69 267.7 363 56.2
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 3.8e-68 262.7 362 57.2
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 3.8e-68 262.7 348 58.6
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 1.1e-67 261.2 345 58.8
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 7.1e-67 258.5 349 58.5
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 2.7e-66 256.5 337 60.8
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 3.5e-66 256.1 354 56.2
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 4.6e-66 255.8 369 52.6
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.6e-66 255.8 334 60.5
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 6.0e-66 255.4 337 59.1
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 7.8e-66 255.0 338 58.6
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 1.0e-65 254.6 340 59.4
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.0e-65 254.6 314 61.5
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 1.7e-65 253.8 361 55.7
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.3e-65 253.4 370 54.1
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 3.9e-65 252.7 349 59.3
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 5.1e-65 252.3 372 54.6
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 5.1e-65 252.3 370 55.9
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 6.6e-65 251.9 351 60.4
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 6.6e-65 251.9 359 58.5
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 6.6e-65 251.9 339 58.1
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.5e-64 250.8 372 54.3
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 2.5e-64 250.0 376 52.4
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 3.3e-64 249.6 372 55.1
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 5.6e-64 248.8 332 54.5
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 9.6e-64 248.1 348 54.9
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 1.3e-63 247.7 340 57.9
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.6e-63 247.3 346 54.0
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.6e-63 247.3 347 54.2
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 3.6e-63 246.1 353 57.8
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 6.2e-63 245.4 370 54.3
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.1e-62 244.6 351 55.6
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 2.4e-62 243.4 355 55.2
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 3.1e-62 243.0 315 58.1
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 5.3e-62 242.3 325 61.2
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 1.2e-61 241.1 334 59.3
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 1.2e-61 241.1 367 51.5
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.0e-61 240.4 367 50.7
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 2.0e-61 240.4 369 51.5
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 2.6e-61 240.0 352 50.6
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 7.6e-61 238.4 343 51.9
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 7.6e-61 238.4 377 53.3
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 7.6e-61 238.4 359 50.1
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 4.9e-60 235.7 327 53.8
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 6.4e-60 235.3 344 54.4
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 4.2e-59 232.6 358 52.2
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.2e-58 231.1 350 55.7
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 2.1e-58 230.3 350 55.4
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 4.6e-58 229.2 348 53.2
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 3.9e-57 226.1 356 53.7
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 1.9e-56 223.8 308 55.8
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 3.3e-56 223.0 350 56.6
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 2.8e-55 219.9 352 56.5
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 2.8e-55 219.9 355 54.4
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 6.2e-55 218.8 349 58.7
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.8e-54 217.2 353 58.1
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 1.2e-53 214.5 317 53.9
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 3.4e-53 213.0 341 49.9
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 4.5e-53 212.6 317 58.0
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 7.6e-53 211.8 335 54.9
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 3.2e-51 206.5 329 51.1
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 1.6e-50 204.1 328 52.7
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 2.1e-50 203.8 403 49.4
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 1.5e-48 197.6 310 54.2
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 4.3e-48 196.1 301 57.1
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 7.4e-48 195.3 311 54.3
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 1.3e-47 194.5 306 56.2
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 8.1e-47 191.8 341 49.9
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 3.1e-46 189.9 321 47.0
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.0e-46 189.5 297 54.2
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 6.9e-46 188.7 300 51.3
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 6.9e-46 188.7 300 51.3
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 1.5e-45 187.6 305 51.1
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 5.8e-45 185.7 305 50.8
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 5.8e-45 185.7 305 50.8
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 2.9e-44 183.3 275 53.8
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 2.9e-44 183.3 351 45.3
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 1.2e-42 177.9 299 52.5
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 3.5e-42 176.4 312 51.6
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 2.3e-41 173.7 327 47.7
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 9.6e-40 168.3 309 52.4
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 4.8e-39 166.0 322 51.6
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 5.3e-38 162.5 323 52.9
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 9.0e-38 161.8 321 48.0
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 9.0e-38 161.8 304 52.6
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 2.6e-37 160.2 369 48.0
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 4.5e-37 159.5 315 50.8
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 1.3e-36 157.9 323 51.1
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 1.3e-36 157.9 224 54.0
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 1.7e-36 157.5 333 49.5
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 2.2e-36 157.1 340 43.8
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 2.9e-36 156.8 315 48.3
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 5.5e-35 152.5 351 43.9
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 7.2e-35 152.1 388 41.2
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 1.2e-34 151.4 338 51.8
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 3.6e-34 149.8 358 44.4
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 1.0e-33 148.3 351 43.9
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 5.1e-33 146.0 318 45.0
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 2.5e-32 143.7 326 46.9
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 1.3e-31 141.4 375 38.9
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 2.6e-29 133.7 243 54.3
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 3.4e-29 133.3 321 42.4
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 1.9e-27 127.5 210 45.7
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 5.5e-27 125.9 321 42.1
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.4e-27 125.2 146 56.8
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 5.1e-25 119.4 156 55.1
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 4.4e-24 116.3 318 41.8
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 2.4e-22 110.5 161 46.6
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 9.1e-22 108.6 230 44.3
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 2.0e-21 107.5 333 40.2
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 3.8e-20 103.2 167 50.3
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 2.5e-19 100.5 88 63.6
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 1.3e-15 88.2 204 39.2
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.0e-13 80.9 93 66.7
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 2.9e-12 77.0 289 28.7
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 1.2e-10 71.6 385 34.3
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.5e-08 64.7 144 34.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.6e-08 63.9 273 28.9
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.3e-08 63.5 328 26.5
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 3.3e-08 63.5 325 28.3
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 7.5e-08 62.4 333 27.0
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 9.7e-08 62.0 319 29.2
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 9.7e-08 62.0 327 27.2
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.3e-07 61.6 322 28.0
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 1.7e-07 61.2 315 29.2
Nn2g12462 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.8e-07 60.5 83 44.6
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.1e-06 58.5 328 28.0
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.4e-06 58.2 328 26.8
Cpa.g.sc1.312 Carica papaya HOM05D002337 ORTHO05D002412 2.4e-06 57.4 60 56.7
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.4e-06 57.4 321 27.1
Lj5g0026996 Lotus japonicus HOM05D002337 ORTHO05D002412 2.4e-06 57.4 312 25.3
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 2.4e-06 57.4 310 28.4
Prupe.6G246800 Prunus persica HOM05D002337 ORTHO05D002412 2.4e-06 57.4 316 27.8
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.4e-06 57.4 317 30.0
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 3.1e-06 57.0 324 27.5
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.1e-06 56.6 33 84.8
Psat6g238280 Pisum sativum HOM05D002337 ORTHO05D002412 4.1e-06 56.6 312 26.3
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 4.1e-06 56.6 76 50.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 5.3e-06 56.2 317 27.8
Ciclev10031892m.g Citrus clementina HOM05D002337 ORTHO05D002412 5.3e-06 56.2 56 55.4
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 5.3e-06 56.2 307 27.4
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 5.3e-06 56.2 307 27.4
Medtr1g115605 Medicago truncatula HOM05D002337 ORTHO05D002412 5.3e-06 56.2 310 26.1
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 7.0e-06 55.8 333 28.2
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 7.0e-06 55.8 336 27.1
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.0e-06 55.8 273 27.8
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 7.0e-06 55.8 326 26.4
Thecc.10G060300 Theobroma cacao HOM05D002337 ORTHO05D002412 7.0e-06 55.8 45 60.0
Aqoxy4G03075 Aquilegia oxysepala HOM05D002337 ORTHO05D002412 9.1e-06 55.5 54 53.7
CANSAT56G1162 Cannabis sativa HOM05D002337 ORTHO05D002412 9.1e-06 55.5 52 57.7
CANSAT56G3693 Cannabis sativa HOM05D002337 ORTHO05D002412 9.1e-06 55.5 52 57.7
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 9.1e-06 55.5 105 37.1
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 9.1e-06 55.5 354 28.0
Os01g0836900 Oryza sativa ssp. japonica HOM05D002337 ORTHO05D002412 9.1e-06 55.5 57 54.4
TAR623G1231 Trochodendron aralioides HOM05D002337 ORTHO05D002412 9.1e-06 55.5 58 55.2


User provided reference genes

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