Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034267.1 Olea europaea HOM05D002612 ORTHO05D002859 4.7e-35 150.6 74 100.0
Oeu033736.1 Olea europaea HOM05D002612 ORTHO05D002859 2.5e-12 75.1 44 77.3
Nitab4.5_0000324g0010 Nicotiana tabacum HOM05D002612 ORTHO05D002859 5.6e-12 73.9 41 80.5
Cfa020162 Carpinus fangiana HOM05D002612 ORTHO05D002859 9.6e-12 73.2 41 80.5
PGR142G1191 Punica granatum HOM05D002612 ORTHO05D002859 9.6e-12 73.2 41 80.5
Nitab4.5_0002488g0060 Nicotiana tabacum HOM05D002612 ORTHO05D002859 1.3e-11 72.8 41 78.0
SGA_v2.0_scaffold105G30491 Striga asiatica HOM05D002612 ORTHO05D002859 1.3e-11 72.8 43 74.4
SGA_v2.0_scaffold37G14819 Striga asiatica HOM05D002612 ORTHO05D002859 1.3e-11 72.8 43 74.4
Lsat_1_v5_gn_5_163560 Lactuca sativa HOM05D002612 ORTHO05D002859 1.6e-11 72.4 46 67.4
CiPaw.10G026200 Carya illinoinensis HOM05D002612 ORTHO05D002859 2.1e-11 72.0 41 80.5
Migut.J01834 Erythranthe guttata HOM05D002612 ORTHO05D002859 2.8e-11 71.6 41 78.0
Peaxi162Scf00258g00631 Petunia axillaris HOM05D002612 ORTHO05D002859 2.8e-11 71.6 41 78.0
Aqoxy2G00058 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 3.7e-11 71.2 41 78.0
MSTRG.19906 Avicennia marina HOM05D002612 ORTHO05D002859 3.7e-11 71.2 41 75.6
MELO3C009622.2 Cucumis melo HOM05D002612 ORTHO05D002859 3.7e-11 71.2 43 72.1
CsaV3_3G038780 Cucumis sativus L. HOM05D002612 ORTHO05D002859 3.7e-11 71.2 43 72.1
Dinv24067 Davidia involucrata HOM05D002612 ORTHO05D002859 4.8e-11 70.9 41 78.0
QL07p023812 Quercus lobata HOM05D002612 ORTHO05D002859 4.8e-11 70.9 41 78.0
Solyc03g063350.3 Solanum lycopersicum HOM05D002612 ORTHO05D002859 6.2e-11 70.5 43 69.8
Sopen03g016040 Solanum pennellii HOM05D002612 ORTHO05D002859 6.2e-11 70.5 43 69.8
PGSC0003DMG400019954 Solanum tuberosum HOM05D002612 ORTHO05D002859 6.2e-11 70.5 43 69.8
Sed0010869 Sechium edule HOM05D002612 ORTHO05D002859 8.1e-11 70.1 43 74.4
Eucgr.K01842 Eucalyptus grandis HOM05D002612 ORTHO05D002859 1.1e-10 69.7 39 79.5
Lj5g0018767 Lotus japonicus HOM05D002612 ORTHO05D002859 1.1e-10 69.7 43 72.1
Hund19204 Selenicereus undatus HOM05D002612 ORTHO05D002859 1.1e-10 69.7 41 75.6
Atru.chr8.1116 Acer truncatum HOM05D002612 ORTHO05D002859 1.4e-10 69.3 43 74.4
Ca_12071_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 1.4e-10 69.3 42 76.2
TAR623G0372 Trochodendron aralioides HOM05D002612 ORTHO05D002859 1.4e-10 69.3 41 75.6
unitig_699.g19445 Utricularia gibba HOM05D002612 ORTHO05D002859 1.4e-10 69.3 39 79.5
VMungo1383G3725 Vigna mungo HOM05D002612 ORTHO05D002859 1.4e-10 69.3 36 86.1
Cpa.g.sc85.63 Carica papaya HOM05D002612 ORTHO05D002859 1.8e-10 68.9 41 75.6
FAN09G3207 Fragaria x ananassa HOM05D002612 ORTHO05D002859 1.8e-10 68.9 38 78.9
Glyma.03G144900 Glycine max HOM05D002612 ORTHO05D002859 1.8e-10 68.9 37 83.8
Medtr0015s0110 Medicago truncatula HOM05D002612 ORTHO05D002859 1.8e-10 68.9 40 80.0
RcHm_v2.0_Chr3g0479541 Rosa chinensis HOM05D002612 ORTHO05D002859 1.8e-10 68.9 38 78.9
CSS0019314 Camellia sinensis var. sinensis HOM05D002612 ORTHO05D002859 2.4e-10 68.6 69 52.2
Glyma.19G148000 Glycine max HOM05D002612 ORTHO05D002859 2.4e-10 68.6 41 75.6
Manes.09G035700 Manihot esculenta HOM05D002612 ORTHO05D002859 2.4e-10 68.6 41 75.6
Rhsim03G0005800 Rhododendron simsii HOM05D002612 ORTHO05D002859 2.4e-10 68.6 41 75.6
CANSAT64G1369 Cannabis sativa HOM05D002612 ORTHO05D002859 3.1e-10 68.2 41 75.6
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 3.1e-10 68.2 41 75.6
FvH4_6g22210 Fragaria vesca HOM05D002612 ORTHO05D002859 3.1e-10 68.2 37 81.1
FAN14G3252 Fragaria x ananassa HOM05D002612 ORTHO05D002859 3.1e-10 68.2 37 81.1
Lalb_Chr18g0047881 Lupinus albus HOM05D002612 ORTHO05D002859 3.1e-10 68.2 41 73.2
MBI06_g15023_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 3.1e-10 68.2 43 69.8
Psat6g091240 Pisum sativum HOM05D002612 ORTHO05D002859 3.1e-10 68.2 43 72.1
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 4.0e-10 67.8 49 63.3
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea HOM05D002612 ORTHO05D002859 4.0e-10 67.8 41 73.2
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea HOM05D002612 ORTHO05D002859 4.0e-10 67.8 41 73.2
Carub.0004s2442 Capsella rubella HOM05D002612 ORTHO05D002859 4.0e-10 67.8 42 71.4
TWI74G1029 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 4.0e-10 67.8 43 67.4
Actinidia32395 Actinidia chinensis HOM05D002612 ORTHO05D002859 5.3e-10 67.4 41 73.2
ATR0807G015 Amborella trichopoda HOM05D002612 ORTHO05D002859 5.3e-10 67.4 41 73.2
Sp4g24300 Schrenkiella parvula HOM05D002612 ORTHO05D002859 5.3e-10 67.4 39 76.9
GSVIVG01033493001 Vitis vinifera HOM05D002612 ORTHO05D002859 5.3e-10 67.4 41 70.7
Zm00001eb320120 Zea mays HOM05D002612 ORTHO05D002859 5.3e-10 67.4 43 67.4
Glyma.02G172700 Glycine max HOM05D002612 ORTHO05D002859 6.9e-10 67.0 40 72.5
Nn2g15693 Nelumbo nucifera HOM05D002612 ORTHO05D002859 6.9e-10 67.0 41 73.2
Phvul.001G142600 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 6.9e-10 67.0 36 83.3
Sabra16G0049300 Salix brachista HOM05D002612 ORTHO05D002859 6.9e-10 67.0 39 76.9
Sed0006567 Sechium edule HOM05D002612 ORTHO05D002859 6.9e-10 67.0 65 56.9
CAN.G570.9 Capsicum annuum HOM05D002612 ORTHO05D002859 9.0e-10 66.6 43 67.4
Duzib106G0243 Durio zibethinus HOM05D002612 ORTHO05D002859 9.0e-10 66.6 40 72.5
SalBow6G0399 Salvia bowleyana HOM05D002612 ORTHO05D002859 9.0e-10 66.6 43 65.1
TPR.G32347 Trifolium pratense HOM05D002612 ORTHO05D002859 9.0e-10 66.6 42 71.4
EL10Ac3g06912 Beta vulgaris HOM05D002612 ORTHO05D002859 1.2e-09 66.2 41 73.2
BcaC02g12457 Brassica carinata HOM05D002612 ORTHO05D002859 1.2e-09 66.2 39 74.4
C04p03250 Brassica napus HOM05D002612 ORTHO05D002859 1.2e-09 66.2 39 74.4
BolC4t21963H Brassica oleracea HOM05D002612 ORTHO05D002859 1.2e-09 66.2 39 74.4
Carub.0005s2487 Capsella rubella HOM05D002612 ORTHO05D002859 1.2e-09 66.2 39 76.9
AUR62012027 Chenopodium quinoa HOM05D002612 ORTHO05D002859 1.2e-09 66.2 41 68.3
SalBow6G1620 Salvia bowleyana HOM05D002612 ORTHO05D002859 1.2e-09 66.2 43 65.1
Aa31LG1G24120 Aethionema arabicum HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
AL4G40440 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 1.5e-09 65.9 40 72.5
AT2G42080 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 1.5e-09 65.9 40 72.5
BcaB06g29225 Brassica carinata HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
BcaC02g07265 Brassica carinata HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
BcaNung04409 Brassica carinata HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
A04p31980 Brassica napus HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
A05p02720 Brassica napus HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
C04p69490 Brassica napus HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
BolC4t28448H Brassica oleracea HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
BraA04t18656Z Brassica rapa HOM05D002612 ORTHO05D002859 1.5e-09 65.9 39 74.4
Ciclev10012465m.g Citrus clementina HOM05D002612 ORTHO05D002859 1.5e-09 65.9 41 75.6
Prupe.7G077400 Prunus persica HOM05D002612 ORTHO05D002859 1.5e-09 65.9 38 78.9
Thhalv10006160m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 2.0e-09 65.5 39 74.4
HanXRQChr01g0009751 Helianthus annuus HOM05D002612 ORTHO05D002859 2.0e-09 65.5 41 68.3
MD14G1056500 Malus domestica HOM05D002612 ORTHO05D002859 2.0e-09 65.5 38 73.7
Phvul.007G260100 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 2.0e-09 65.5 43 69.8
BraA05t19264Z Brassica rapa HOM05D002612 ORTHO05D002859 2.6e-09 65.1 39 71.8
Gohir.A09G128100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 3.4e-09 64.7 40 72.5
Gohir.D09G124100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 3.4e-09 64.7 40 72.5
Gorai.006G142900 Gossypium raimondii HOM05D002612 ORTHO05D002859 3.4e-09 64.7 40 72.5
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 3.4e-09 64.7 39 74.4
PSO675G2711 Papaver somniferum HOM05D002612 ORTHO05D002859 3.4e-09 64.7 38 73.7
THA.LOC104802604 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 3.4e-09 64.7 37 81.1
Cc06_g15900 Coffea canephora HOM05D002612 ORTHO05D002859 4.5e-09 64.3 39 71.8
ECA248G2814 Erigeron canadensis HOM05D000267 ORTHO05D000298 4.5e-09 64.3 37 78.4
AL5G39680 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 5.8e-09 63.9 39 74.4
BcaC07g40175 Brassica carinata HOM05D002612 ORTHO05D002859 5.8e-09 63.9 39 71.8
CARHR168340 Cardamine hirsuta HOM05D002612 ORTHO05D002859 5.8e-09 63.9 39 74.4
Duzib128G1439 Durio zibethinus HOM05D002612 ORTHO05D002859 5.8e-09 63.9 41 70.7
Os07g0470800 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 7.6e-09 63.5 32 81.2
Sp5g04700 Schrenkiella parvula HOM05D002612 ORTHO05D002859 7.6e-09 63.5 39 71.8
AT3G58020 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 1.0e-08 63.2 39 74.4
AUR62015364 Chenopodium quinoa HOM05D002612 ORTHO05D002859 1.3e-08 62.8 41 65.9
Migut.J01833 Erythranthe guttata HOM05D002612 ORTHO05D002859 1.3e-08 62.8 35 74.3
Cc06_g15910 Coffea canephora HOM05D002612 ORTHO05D002859 1.7e-08 62.4 39 69.2
DCAR_013544 Daucus carota HOM05D002612 ORTHO05D002859 2.2e-08 62.0 39 69.2
ATR0820G143 Amborella trichopoda HOM05D002612 ORTHO05D002859 3.8e-08 61.2 41 63.4
Thecc.05G171700 Theobroma cacao HOM05D002612 ORTHO05D002859 3.8e-08 61.2 39 71.8
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 3.8e-08 61.2 43 67.4
Actinidia14360 Actinidia chinensis HOM05D002612 ORTHO05D002859 6.5e-08 60.5 39 69.2
Aqoxy5G02093 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 8.4e-08 60.1 39 64.1
A09p50840 Brassica napus HOM05D002612 ORTHO05D002859 1.9e-07 58.9 41 63.4
HPP92_022664 Vanilla planifolia HOM05D002612 ORTHO05D002859 1.9e-07 58.9 41 58.5
Carub.0004s2441 Capsella rubella HOM05D002612 ORTHO05D002859 2.5e-07 58.5 39 66.7
Migut.H01125 Erythranthe guttata HOM05D002612 ORTHO05D002859 3.2e-07 58.2 32 75.0
BraA09t40530Z Brassica rapa HOM05D002612 ORTHO05D002859 4.2e-07 57.8 39 66.7
Dinv15109 Davidia involucrata HOM05D002612 ORTHO05D002859 4.2e-07 57.8 39 64.1
Actinidia12238 Actinidia chinensis HOM05D002612 ORTHO05D002859 5.5e-07 57.4 41 68.3
C08p33580 Brassica napus HOM05D002612 ORTHO05D002859 5.5e-07 57.4 39 66.7
Ciclev10026217m.g Citrus clementina HOM05D002612 ORTHO05D002859 5.5e-07 57.4 39 66.7
HanXRQChr09g0259761 Helianthus annuus HOM05D002612 ORTHO05D002859 5.5e-07 57.4 39 61.5
Lj1g0016833 Lotus japonicus HOM05D002612 ORTHO05D002859 5.5e-07 57.4 39 64.1
Eucgr.I00248 Eucalyptus grandis HOM05D002612 ORTHO05D002859 7.1e-07 57.0 40 62.5
CARHR137160 Cardamine hirsuta HOM05D002612 ORTHO05D002859 9.3e-07 56.6 43 60.5
Duzib187G0226 Durio zibethinus HOM05D002612 ORTHO05D002859 9.3e-07 56.6 39 64.1
Thhalv10022818m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 1.2e-06 56.2 40 62.5
Peaxi162Scf00025g02430 Petunia axillaris HOM05D002612 ORTHO05D002859 1.6e-06 55.8 39 64.1
Sabra19G0022700 Salix brachista HOM05D002612 ORTHO05D002859 1.6e-06 55.8 41 58.5
BcaB07g31668 Brassica carinata HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 64.1
Cpa.g.sc152.23 Carica papaya HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 64.1
COL.COLO4_22413 Corchorus olitorius HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 64.1
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 64.1
Oeu028500.1 Olea europaea HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 59.0
Phvul.009G147300 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 61.5
Potri.019G010000 Populus trichocarpa HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 61.5
Sabra19G0018900 Salix brachista HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 61.5
Sabra19G0023200 Salix brachista HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 61.5
Sc07g0001640 Simmondsia chinensis HOM05D002612 ORTHO05D002859 2.1e-06 55.5 40 60.0
SGA_v2.0_scaffold227G43224 Striga asiatica HOM05D002612 ORTHO05D002859 2.1e-06 55.5 32 71.9
SGA_v2.0_scaffold62G21399 Striga asiatica HOM05D002612 ORTHO05D002859 2.1e-06 55.5 32 71.9
VMungo1309G1282 Vigna mungo HOM05D002612 ORTHO05D002859 2.1e-06 55.5 39 61.5
AT2G18465 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 2.7e-06 55.1 41 53.7
Glyma.04G216300 Glycine max HOM05D002612 ORTHO05D002859 2.7e-06 55.1 41 58.5
Nitab4.5_0001582g0020 Nicotiana tabacum HOM05D002612 ORTHO05D002859 2.7e-06 55.1 39 61.5
Nitab4.5_0011433g0030 Nicotiana tabacum HOM05D002612 ORTHO05D002859 2.7e-06 55.1 39 61.5
TWI79G0923 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 2.7e-06 55.1 39 61.5
Aqoxy5G02092 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
AT2G42065 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 3.5e-06 54.7 36 66.7
BcaC02g07266 Brassica carinata HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 64.1
Carub.0003s3261 Capsella rubella HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 59.0
Cfa002873 Carpinus fangiana HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
Ca_16913_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
Glyma.09G116600 Glycine max HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
Lsat_1_v5_gn_4_137640 Lactuca sativa HOM05D002612 ORTHO05D002859 3.5e-06 54.7 41 53.7
QL06p051793 Quercus lobata HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
Sp3g31890 Schrenkiella parvula HOM05D002612 ORTHO05D002859 3.5e-06 54.7 40 62.5
Solyc11g005400.2 Solanum lycopersicum HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
Sopen11g001410 Solanum pennellii HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
PGSC0003DMG400003989 Solanum tuberosum HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
GSVIVG01026590001 Vitis vinifera HOM05D002612 ORTHO05D002859 3.5e-06 54.7 39 61.5
AL3G51750 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 4.6e-06 54.3 39 56.4
BolC8t50953H Brassica oleracea HOM05D002612 ORTHO05D002859 4.6e-06 54.3 39 64.1
Os05g0106500 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 4.6e-06 54.3 41 56.1
Sed0024742 Sechium edule HOM05D002612 ORTHO05D002859 4.6e-06 54.3 39 61.5
Sed0025054 Sechium edule HOM05D002612 ORTHO05D002859 4.6e-06 54.3 39 59.0
MBI08_g14971_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 6.0e-06 53.9 41 56.1
Sabra06G0147900 Salix brachista HOM05D002612 ORTHO05D002859 6.0e-06 53.9 55 52.7
CDE06G1146 Ceratophyllum demersum HOM05D002612 ORTHO05D002859 7.9e-06 53.5 37 64.9
TPR.G18733 Trifolium pratense HOM05D002612 ORTHO05D002859 7.9e-06 53.5 40 60.0


User provided reference genes

Program Settings