Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.5e-220 768.5 392 100.0
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 2.3e-104 383.3 263 74.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 6.3e-70 268.9 268 57.8
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.8e-69 267.3 262 57.3
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.7e-67 260.8 268 54.1
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.1e-65 253.8 263 56.3
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.8e-64 248.4 273 54.2
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.0e-63 247.3 267 55.1
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.4e-63 246.5 269 52.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.4e-63 246.5 268 52.2
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.4e-63 246.5 268 52.2
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 4.1e-61 239.6 291 52.6
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 2.0e-60 237.3 274 52.2
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.1e-58 231.5 268 50.4
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.2e-57 228.0 281 49.5
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.6e-57 227.6 276 52.9
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.6e-57 226.5 286 49.0
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.8e-56 224.2 272 49.6
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.8e-56 224.2 238 56.3
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.3e-56 223.8 271 48.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 5.2e-56 222.6 269 49.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.9e-56 221.9 275 50.9
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 7.5e-55 218.8 261 52.5
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 2.2e-54 217.2 270 50.7
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 6.4e-54 215.7 297 47.1
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.2e-53 213.4 242 51.7
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.4e-53 212.6 242 51.7
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.6e-52 211.1 280 48.9
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.5e-52 209.9 242 51.7
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.3e-51 207.2 269 48.7
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.9e-51 206.5 280 49.3
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 5.0e-51 206.1 295 46.8
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.5e-50 203.8 270 49.6
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 2.5e-50 203.8 247 52.2
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 4.3e-50 203.0 299 47.2
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 8.0e-49 198.7 249 51.8
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.1e-48 198.4 279 49.1
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.0e-48 196.4 229 51.5
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 4.0e-48 196.4 212 53.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 6.8e-48 195.7 225 56.4
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 6.8e-48 195.7 248 51.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 8.9e-48 195.3 249 48.6
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.6e-47 193.7 243 50.2
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 9.8e-47 191.8 259 48.6
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.3e-46 191.4 279 46.6
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.2e-46 190.7 271 49.8
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.4e-45 188.0 223 50.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.6e-44 184.5 282 46.8
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 2.0e-44 184.1 269 46.8
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.3e-43 181.4 270 45.9
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 2.3e-43 180.6 257 49.8
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.3e-43 180.6 275 44.7
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 3.0e-43 180.3 252 44.8
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.5e-42 177.9 248 47.6
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 3.3e-42 176.8 300 47.0
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.3e-42 176.4 268 44.0
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 5.6e-42 176.0 268 50.4
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.3e-42 175.6 320 40.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 9.5e-42 175.3 285 42.8
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.2e-41 174.9 206 52.4
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.2e-41 174.9 242 47.9
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-41 174.5 315 41.3
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-41 174.5 315 41.3
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 6.2e-41 172.6 218 50.0
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.8e-40 171.0 282 44.3
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 3.1e-40 170.2 252 46.4
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.5e-39 167.9 248 45.2
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 2.6e-39 167.2 300 44.7
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 4.4e-39 166.4 246 44.7
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 4.4e-39 166.4 276 43.1
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.7e-38 164.5 231 46.3
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 4.9e-38 162.9 295 43.1
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 6.4e-38 162.5 232 49.1
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.1e-37 161.8 238 47.5
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.4e-37 160.6 257 44.0
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 3.2e-37 160.2 166 54.8
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.6e-36 156.4 285 43.2
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.9e-35 153.3 253 43.5
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 3.9e-35 153.3 244 43.4
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 5.1e-35 152.9 262 44.3
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 6.6e-35 152.5 197 50.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 8.6e-35 152.1 239 42.7
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 8.6e-35 152.1 239 42.7
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.1e-34 151.8 216 46.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 3.3e-34 150.2 284 40.1
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.3e-34 149.8 238 42.4
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.6e-34 149.4 258 43.4
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 7.3e-34 149.1 238 44.5
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 9.5e-34 148.7 241 44.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.1e-33 147.5 264 43.2
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.8e-33 147.1 242 44.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 3.6e-33 146.7 239 43.1
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.6e-33 146.7 239 42.3
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 3.6e-33 146.7 242 43.4
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.6e-33 146.7 192 46.9
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.2e-33 146.0 238 45.0
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 8.1e-33 145.6 241 43.6
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.4e-32 144.1 275 41.1
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 5.2e-32 142.9 279 40.5
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.8e-32 142.5 234 42.7
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.4e-31 140.2 200 44.5
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-30 137.9 240 42.1
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.7e-30 137.9 238 42.0
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.8e-30 136.7 312 38.1
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.9e-30 136.3 233 44.2
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 4.9e-30 136.3 284 38.4
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-29 134.8 213 44.6
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.4e-29 134.8 260 39.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.9e-29 134.4 127 59.1
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.4e-29 132.9 233 42.1
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.2e-28 131.7 234 39.7
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.5e-28 130.2 176 50.6
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 3.0e-27 127.1 272 37.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 3.9e-27 126.7 241 39.4
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 8.6e-27 125.6 197 43.1
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.5e-26 124.8 230 41.7
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.9e-26 124.4 209 42.6
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 7.3e-26 122.5 247 37.7
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-25 121.7 227 41.4
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.2e-25 121.7 288 36.5
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 6.2e-25 119.4 231 39.8
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 8.1e-25 119.0 226 38.5
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 8.1e-25 119.0 226 38.5
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 1.4e-24 118.2 234 39.3
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.2e-24 116.3 166 47.6
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.2e-24 116.3 248 39.5
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.2e-23 115.2 163 48.5
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.4e-23 113.6 86 68.6
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.4e-23 113.6 174 47.1
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.4e-23 113.6 160 48.8
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.4e-23 113.2 232 40.5
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.8e-22 110.2 188 44.7
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 3.8e-22 110.2 251 38.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 2.4e-21 107.5 101 61.4
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 9.3e-21 105.5 93 59.1
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 2.3e-19 100.9 283 33.6
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 2.3e-19 100.9 203 36.9
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 5.6e-18 96.3 194 40.2
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 4.0e-16 90.1 200 37.5
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 9.9e-15 85.5 186 36.6
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 5.4e-13 79.7 275 33.5
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 7.1e-13 79.3 91 56.0
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.0e-11 75.5 197 40.6
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.3e-10 70.5 52 63.5
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.3e-10 70.1 253 34.4
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.3e-09 68.6 91 41.8
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.3e-09 68.6 52 61.5
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 3.7e-09 67.0 262 29.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.2e-09 66.2 53 58.5
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 1.8e-08 64.7 132 37.9
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 3.1e-08 63.9 142 36.6
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.1e-08 63.9 79 46.8
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 4.0e-08 63.5 74 48.6
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.0e-08 62.4 46 60.9
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 1.2e-07 62.0 165 33.9
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 4.5e-07 60.1 59 52.5
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 1.7e-06 58.2 60 45.0


User provided reference genes

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