Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 5.1e-20 100.1 51 100.0
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 6.0e-13 76.6 48 81.2
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 3.0e-12 74.3 49 73.5
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 3.0e-12 74.3 51 76.5
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 3.9e-12 73.9 51 74.5
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.9e-12 73.9 51 72.5
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.9e-12 73.9 51 72.5
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 5.1e-12 73.6 50 72.0
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 6.6e-12 73.2 49 71.4
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 6.6e-12 73.2 50 74.0
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 6.6e-12 73.2 50 74.0
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 8.7e-12 72.8 49 71.4
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.5e-11 72.0 48 75.0
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.9e-11 71.6 51 72.5
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 1.9e-11 71.6 50 70.0
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.9e-11 71.6 51 68.6
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.9e-11 71.6 50 68.0
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 2.5e-11 71.2 49 69.4
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 3.3e-11 70.9 49 69.4
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 4.3e-11 70.5 44 79.5
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 5.6e-11 70.1 51 72.5
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 5.6e-11 70.1 51 68.6
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 7.3e-11 69.7 49 69.4
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 7.3e-11 69.7 51 68.6
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 7.3e-11 69.7 51 68.6
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 7.3e-11 69.7 51 68.6
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 7.3e-11 69.7 48 72.9
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 9.6e-11 69.3 50 66.0
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 9.6e-11 69.3 50 68.0
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 9.6e-11 69.3 51 68.6
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 9.6e-11 69.3 51 66.7
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 9.6e-11 69.3 49 69.4
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.3e-10 68.9 51 68.6
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 1.3e-10 68.9 48 70.8
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.3e-10 68.9 49 71.4
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.6e-10 68.6 44 77.3
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.6e-10 68.6 51 66.7
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 2.1e-10 68.2 51 66.7
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 2.1e-10 68.2 50 64.0
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 2.1e-10 68.2 50 64.0
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 2.1e-10 68.2 50 64.0
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 2.1e-10 68.2 50 64.0
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 2.1e-10 68.2 48 70.8
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 2.1e-10 68.2 51 64.7
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 3.6e-10 67.4 51 64.7
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 3.6e-10 67.4 51 66.7
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 3.6e-10 67.4 48 66.7
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 3.6e-10 67.4 48 68.8
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 4.8e-10 67.0 51 64.7
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 4.8e-10 67.0 48 64.6
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 4.8e-10 67.0 51 64.7
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 4.8e-10 67.0 48 70.8
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 4.8e-10 67.0 48 68.8
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 4.8e-10 67.0 44 75.0
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 6.2e-10 66.6 44 77.3
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 6.2e-10 66.6 44 77.3
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 6.2e-10 66.6 44 75.0
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 8.1e-10 66.2 47 66.0
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 8.1e-10 66.2 50 68.0
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.4e-09 65.5 47 66.0
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.8e-09 65.1 47 63.8
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.8e-09 65.1 47 63.8
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.8e-09 65.1 48 66.7
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 1.8e-09 65.1 47 63.8
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.8e-09 65.1 50 60.0
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 2.4e-09 64.7 48 66.7
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 2.4e-09 64.7 48 66.7
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 2.4e-09 64.7 44 75.0
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 3.1e-09 64.3 51 64.7
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 3.1e-09 64.3 48 64.6
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 4.0e-09 63.9 49 65.3
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 4.0e-09 63.9 49 67.3
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.0e-09 63.9 47 61.7
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 4.0e-09 63.9 47 66.0
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 4.0e-09 63.9 48 68.8
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 5.3e-09 63.5 45 68.9
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 9.0e-09 62.8 38 76.3
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 9.0e-09 62.8 38 76.3
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.2e-08 62.4 49 67.3
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.2e-08 62.4 51 62.7
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-08 62.0 47 61.7
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 1.5e-08 62.0 43 72.1
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 3.4e-08 60.8 45 68.9
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 3.4e-08 60.8 49 59.2
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 4.4e-08 60.5 47 59.6
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 5.8e-08 60.1 48 62.5
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 1.3e-07 58.9 44 70.5
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.2e-07 58.2 39 74.4
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 2.2e-07 58.2 43 67.4
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.1e-06 55.8 44 61.4
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.4e-06 54.7 44 61.4


User provided reference genes

Program Settings