Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.2e-163 578.9 299 100.0
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 1.1e-90 337.4 302 61.6
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 2.6e-84 316.2 299 58.5
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 3.8e-83 312.4 302 58.9
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 5.0e-83 312.0 304 58.9
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.2e-82 309.3 302 60.3
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.1e-81 306.6 300 56.7
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 6.1e-81 305.1 303 58.7
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 7.9e-81 304.7 306 58.5
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 3.0e-80 302.8 299 56.5
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 9.7e-79 297.7 273 61.9
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.8e-77 293.5 311 54.7
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.2e-76 290.8 302 56.3
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 2.6e-76 289.7 347 50.7
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 6.5e-75 285.0 322 54.7
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 8.5e-75 284.6 300 55.3
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.1e-74 284.3 300 55.7
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 2.5e-74 283.1 300 55.3
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.5e-74 282.0 302 56.6
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 3.9e-72 275.8 305 55.4
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 2.6e-71 273.1 310 53.2
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 7.4e-71 271.6 307 55.4
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 2.4e-69 266.5 304 52.3
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 7.7e-68 261.5 306 51.6
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.0e-67 261.2 300 53.3
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 1.7e-67 260.4 308 52.3
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 5.0e-67 258.8 302 53.3
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 8.5e-67 258.1 303 51.8
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 8.5e-67 258.1 302 52.3
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 1.5e-66 257.3 301 49.5
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 2.5e-66 256.5 297 52.9
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.0e-64 249.6 305 49.8
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 4.0e-64 249.2 326 48.5
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 6.7e-64 248.4 314 49.7
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 8.8e-64 248.1 307 51.1
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 8.8e-64 248.1 341 45.5
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 2.0e-63 246.9 313 50.5
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.0e-63 246.9 311 50.8
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 4.4e-63 245.7 305 51.1
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 9.7e-63 244.6 325 48.9
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 1.7e-62 243.8 312 50.0
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 3.7e-62 242.7 300 48.3
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 4.8e-62 242.3 323 49.5
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 6.3e-62 241.9 312 47.8
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 6.3e-62 241.9 301 51.8
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.1e-61 241.1 302 48.7
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.4e-61 240.7 314 48.4
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 2.4e-61 240.0 307 50.8
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 3.1e-61 239.6 312 49.0
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 4.1e-61 239.2 331 47.1
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 5.3e-61 238.8 303 51.5
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 9.1e-61 238.0 300 46.3
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 2.0e-60 236.9 310 47.4
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.0e-60 236.9 308 47.4
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 5.9e-60 235.3 311 48.9
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 7.7e-60 235.0 301 48.5
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.0e-59 234.6 327 48.0
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.0e-59 234.6 306 49.3
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.7e-59 233.8 300 46.0
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.7e-59 233.8 312 47.4
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.7e-59 233.8 326 47.9
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 2.9e-59 233.0 316 48.7
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 2.9e-59 233.0 303 47.9
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 3.8e-59 232.6 305 47.9
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.1e-58 231.1 223 58.7
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.9e-58 230.3 302 48.3
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 5.5e-58 228.8 310 44.5
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.6e-57 227.3 347 42.1
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 2.1e-57 226.9 300 47.7
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.1e-57 226.9 306 47.1
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 4.7e-57 225.7 312 47.8
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 4.7e-57 225.7 312 47.8
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 6.1e-57 225.3 318 45.3
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 6.1e-57 225.3 302 48.3
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.0e-56 224.6 306 47.4
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.0e-56 224.6 312 45.5
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 2.3e-56 223.4 323 46.1
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 2.3e-56 223.4 316 45.6
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.3e-56 223.4 307 45.6
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 2.3e-56 223.4 318 44.7
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 4.0e-56 222.6 304 47.4
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.0e-56 222.6 300 46.7
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 4.0e-56 222.6 315 43.2
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 5.2e-56 222.2 325 45.5
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 6.8e-56 221.9 306 48.4
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 5.7e-55 218.8 318 42.8
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 7.5e-55 218.4 217 53.5
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 3.7e-54 216.1 302 46.4
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 6.3e-54 215.3 329 44.1
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 6.3e-54 215.3 302 44.7
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 1.1e-53 214.5 320 44.4
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-53 214.5 320 44.4
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 1.1e-53 214.5 320 44.4
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.4e-53 214.2 312 44.6
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 3.1e-53 213.0 316 45.3
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.2e-52 211.1 311 44.4
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.2e-52 211.1 304 44.1
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 1.6e-52 210.7 304 45.1
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 4.5e-52 209.1 268 48.1
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 2.3e-51 206.8 365 41.9
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 2.9e-51 206.5 276 48.6
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 5.0e-51 205.7 315 45.1
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 5.0e-51 205.7 315 45.1
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 6.6e-51 205.3 307 42.7
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 8.6e-51 204.9 315 44.1
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.5e-50 204.1 303 43.6
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 5.5e-50 202.2 304 43.1
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 5.5e-50 202.2 241 48.5
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 7.2e-50 201.8 301 42.9
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 6.1e-49 198.7 234 49.6
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 8.0e-49 198.4 230 49.1
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.8e-48 197.2 301 43.2
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 4.0e-48 196.1 308 41.6
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 5.2e-48 195.7 301 42.2
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 6.8e-48 195.3 311 44.1
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.5e-47 194.1 303 42.6
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 7.5e-47 191.8 309 39.2
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 9.8e-47 191.4 309 40.5
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 6.3e-46 188.7 313 39.3
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 3.1e-45 186.4 234 47.0
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 7.0e-45 185.3 306 42.5
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.5e-44 182.6 314 38.2
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 1.9e-42 177.2 248 41.5
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.5e-42 176.8 311 40.2
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.5e-42 176.8 321 38.6
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 9.5e-42 174.9 376 37.0
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 6.8e-40 168.7 165 61.2
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 2.0e-36 157.1 302 40.1
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.3e-34 149.8 314 35.7
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 4.0e-32 142.9 272 37.1
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 4.0e-32 142.9 328 34.1
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 8.9e-32 141.7 304 38.2
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 8.9e-32 141.7 304 38.2
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.2e-31 141.4 157 58.6
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 3.3e-26 123.2 298 37.6
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 1.6e-25 120.9 153 50.3
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 2.3e-24 117.1 167 46.7
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 5.2e-24 115.9 366 31.7
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 6.8e-24 115.5 136 50.7
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.9e-22 110.2 94 66.0
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.4e-22 109.0 382 28.3
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-21 107.8 353 31.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.2e-21 106.7 345 30.4
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.1e-21 106.3 364 30.5
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 6.6e-19 99.0 59 84.7
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.1e-18 98.2 150 45.3
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 3.3e-18 96.7 171 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 5.6e-18 95.9 346 28.3
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.4e-14 82.0 160 37.5
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 3.2e-13 80.1 101 40.6
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 2.1e-09 67.4 166 34.3
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 6.2e-09 65.9 222 27.5
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.1e-08 63.5 244 27.9
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 5.3e-08 62.8 191 29.3
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.9e-08 62.4 56 60.7
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.9e-08 62.4 326 27.0
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 6.9e-08 62.4 233 30.0
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 9.0e-08 62.0 171 29.8
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 9.0e-08 62.0 246 27.6
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 2.6e-07 60.5 102 39.2
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.4e-07 60.1 241 27.0
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 5.8e-07 59.3 86 40.7
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 1.3e-06 58.2 103 37.9
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 1.7e-06 57.8 269 25.3
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 1.7e-06 57.8 208 28.8
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 1.7e-06 57.8 250 26.8
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 2.2e-06 57.4 174 30.5
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 2.2e-06 57.4 88 43.2
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 2.2e-06 57.4 151 32.5
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 2.9e-06 57.0 160 32.5
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 2.9e-06 57.0 273 26.4
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 3.8e-06 56.6 146 31.5
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 6.4e-06 55.8 250 26.8
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 6.4e-06 55.8 249 26.5
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 8.4e-06 55.5 277 24.5
QL11p040051 Quercus lobata HOM05D001401 ORTHO05D006368 8.4e-06 55.5 98 45.9
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 8.4e-06 55.5 78 42.3


User provided reference genes

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