Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.8e-149 531.9 278 100.0
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.1e-67 260.0 261 57.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 2.0e-65 253.4 261 56.3
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 2.2e-61 240.0 261 55.6
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 6.1e-59 231.9 265 53.2
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 6.3e-56 221.9 261 47.9
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 6.3e-56 221.9 261 47.9
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 8.2e-56 221.5 261 48.3
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 8.5e-53 211.5 261 46.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.5e-52 208.8 264 46.6
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.4e-47 194.1 273 44.0
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 9.1e-39 164.9 268 47.0
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.0e-37 161.4 263 41.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 5.0e-37 159.1 261 42.1
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 2.5e-36 156.8 254 42.9
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.5e-36 155.6 259 42.1
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-31 141.4 264 37.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.4e-31 141.0 262 40.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.2e-30 137.9 263 37.6
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.0e-30 137.1 263 39.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.5e-30 136.3 262 37.0
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.5e-30 136.3 266 39.1
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 7.7e-30 135.2 265 39.6
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.7e-29 134.0 263 40.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 8.6e-29 131.7 261 39.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 4.2e-28 129.4 265 40.4
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.1e-27 127.1 263 37.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 6.1e-27 125.6 268 38.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.0e-26 124.8 263 37.3
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.3e-26 123.6 253 39.1
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 2.0e-25 120.6 264 34.5
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.0e-25 120.6 261 38.3
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.6e-25 120.2 253 39.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.7e-25 119.0 259 36.7
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 7.5e-25 118.6 267 35.2
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-24 117.9 263 35.4
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.7e-24 117.5 263 35.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.8e-24 116.7 259 37.5
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.3e-24 115.5 278 34.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-23 113.6 252 37.3
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.4e-23 113.6 252 37.3
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.4e-23 112.5 263 34.6
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 9.2e-23 111.7 253 38.3
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-22 110.9 278 33.5
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.0e-22 110.5 264 35.6
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 4.5e-22 109.4 258 35.7
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-21 107.8 278 33.8
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.3e-21 107.1 266 36.5
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.9e-21 106.7 268 33.6
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.9e-21 106.7 267 35.2
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.9e-21 106.3 261 35.2
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 5.0e-21 105.9 274 36.1
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.1e-20 104.8 264 35.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.1e-20 104.8 268 36.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.5e-20 104.4 264 35.2
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.5e-20 104.4 263 31.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.9e-20 104.0 261 34.9
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.5e-20 103.6 262 36.6
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.3e-20 103.2 248 35.5
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 4.3e-20 102.8 252 31.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 9.5e-20 101.7 262 35.9
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.6e-19 100.9 250 38.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.6e-19 99.8 245 36.3
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 6.1e-19 99.0 261 34.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 6.1e-19 99.0 244 36.9
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.0e-19 98.6 248 35.1
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.4e-18 97.8 252 33.7
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.8e-18 97.4 267 33.3
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 4.0e-18 96.3 259 34.0
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 4.0e-18 96.3 259 33.6
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.2e-18 95.9 261 33.3
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.9e-18 95.1 267 33.0
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.2e-17 94.7 259 32.8
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.5e-17 94.4 264 34.8
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.5e-17 94.4 243 35.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 2.0e-17 94.0 243 34.6
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.0e-17 94.0 252 33.7
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.6e-17 93.6 253 31.6
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.4e-17 93.2 243 35.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.4e-17 93.2 251 34.7
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.4e-17 92.8 263 32.3
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.8e-17 92.4 243 35.4
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.8e-17 92.4 261 33.0
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 9.8e-17 91.7 247 38.5
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 9.8e-17 91.7 262 31.7
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 9.8e-17 91.7 260 32.3
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 9.8e-17 91.7 253 36.0
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.3e-16 91.3 261 33.7
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.3e-16 91.3 268 35.1
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.7e-16 90.9 255 34.9
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.7e-16 90.9 237 36.7
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 6.4e-16 89.0 269 32.0
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.4e-15 87.8 263 35.4
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.4e-15 87.8 191 34.6
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.1e-15 86.3 267 33.3
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.6e-14 84.3 242 32.6
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.6e-14 84.3 259 31.7
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.0e-14 84.0 254 29.9
Oeu053875.1 Olea europaea HOM05D003937 ORTHO05D004583 2.7e-14 83.6 90 56.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.7e-14 83.6 265 33.2
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.5e-14 83.2 253 33.6
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 6.0e-14 82.4 263 32.7
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 7.8e-14 82.0 263 32.7
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.0e-13 81.6 251 33.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.0e-13 81.6 190 35.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.3e-13 81.3 229 31.9
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.3e-13 80.5 242 31.4
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.0e-13 79.3 88 46.6
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 8.6e-13 78.6 101 47.5
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.9e-12 77.4 241 32.0
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 5.6e-12 75.9 264 29.9
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.5e-12 75.1 204 35.3
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.8e-11 73.6 261 29.5
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 6.2e-11 72.4 282 30.1
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 6.8e-10 68.9 230 33.0
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-09 67.8 209 33.5
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.5e-09 67.8 261 28.4
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.5e-09 67.8 272 28.3
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 2.6e-09 67.0 264 29.2
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 5.8e-09 65.9 258 27.1
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 7.5e-09 65.5 103 40.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 7.5e-09 65.5 104 40.4
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 7.5e-09 65.5 206 30.6
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.2e-08 63.9 261 29.1
Actinidia32073 Actinidia chinensis HOM05D003937 ORTHO05D012928 4.9e-08 62.8 103 35.0
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.9e-07 60.8 251 30.7
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.9e-07 60.8 128 35.2
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 2.4e-07 60.5 195 32.8
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.1e-07 59.7 88 38.6
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 7.1e-07 58.9 73 43.8
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 7.1e-07 58.9 88 44.3
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 7.1e-07 58.9 201 31.3
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.6e-06 57.8 59 49.2
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.1e-06 57.4 51 58.8
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.7e-06 57.0 97 43.3
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.7e-06 57.0 97 43.3
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.7e-06 57.0 97 43.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.0e-06 55.8 100 44.0


User provided reference genes

Program Settings