Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 7.7e-64 246.9 118 100.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 5.2e-52 207.6 112 84.8
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-51 206.1 110 86.4
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.4e-51 204.9 105 89.5
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.4e-51 204.9 105 89.5
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 3.4e-51 204.9 118 83.1
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.4e-49 199.5 105 86.7
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 3.2e-49 198.4 118 80.5
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 6.0e-48 194.1 108 82.4
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 6.0e-48 194.1 105 83.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 7.8e-48 193.7 121 76.9
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.0e-47 193.4 118 78.0
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.7e-47 192.6 105 82.9
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.5e-46 189.5 107 82.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.5e-46 189.5 112 76.8
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.5e-46 188.7 118 79.7
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 7.3e-46 187.2 116 75.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 9.5e-46 186.8 107 80.4
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.2e-45 186.4 109 78.0
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.1e-45 185.7 112 76.8
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.8e-45 185.3 109 77.1
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 3.6e-45 184.9 118 73.7
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 6.2e-45 184.1 111 75.7
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.3e-44 182.2 112 74.1
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 2.3e-44 182.2 102 81.4
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.0e-44 181.4 103 79.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.8e-44 180.6 114 72.8
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 8.9e-44 180.3 118 72.0
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 8.9e-44 180.3 96 86.5
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 8.9e-44 180.3 112 74.1
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.2e-43 179.9 112 75.0
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.2e-43 179.9 106 76.4
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.5e-43 179.5 105 78.1
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.0e-43 179.1 112 75.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 2.6e-43 178.7 112 75.9
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 2.6e-43 178.7 112 73.2
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 2.6e-43 178.7 112 73.2
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 3.4e-43 178.3 96 86.5
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 5.8e-43 177.6 117 71.8
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 7.5e-43 177.2 105 78.1
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 9.8e-43 176.8 105 78.1
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 9.8e-43 176.8 102 77.5
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 9.8e-43 176.8 96 85.4
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.3e-42 176.4 96 85.4
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.7e-42 176.0 119 72.3
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.2e-42 175.6 94 86.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.2e-42 175.6 107 76.6
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.9e-42 175.3 118 70.3
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.9e-42 175.3 96 84.4
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 2.9e-42 175.3 89 88.8
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.7e-42 174.9 94 86.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 4.9e-42 174.5 94 86.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 4.9e-42 174.5 108 75.9
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 6.4e-42 174.1 105 78.1
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 6.4e-42 174.1 105 78.1
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 6.4e-42 174.1 94 87.2
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 8.3e-42 173.7 101 79.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.1e-41 173.3 120 72.5
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.4e-41 172.9 96 83.3
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.9e-41 172.6 96 83.3
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 2.4e-41 172.2 105 76.2
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.4e-41 172.2 116 74.1
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 2.4e-41 172.2 107 75.7
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 3.2e-41 171.8 115 73.9
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.2e-41 171.8 105 76.2
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 3.2e-41 171.8 105 76.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 5.4e-41 171.0 101 79.2
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 9.2e-41 170.2 115 69.6
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 9.2e-41 170.2 105 76.2
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 9.2e-41 170.2 118 70.3
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.2e-40 169.9 102 78.4
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.6e-40 169.5 112 73.2
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.6e-40 169.5 109 77.1
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 2.7e-40 168.7 115 73.0
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.7e-40 168.7 106 78.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.7e-40 168.7 106 78.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 3.5e-40 168.3 115 70.4
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 4.6e-40 167.9 117 71.8
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 4.6e-40 167.9 118 68.6
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 6.0e-40 167.5 118 69.5
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 6.0e-40 167.5 104 76.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 7.8e-40 167.2 105 73.3
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 7.8e-40 167.2 103 75.7
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 7.8e-40 167.2 96 81.2
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.0e-39 166.8 118 68.6
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.0e-39 166.8 118 68.6
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.3e-39 166.4 107 73.8
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.3e-39 166.4 118 67.8
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.7e-39 166.0 118 67.8
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.7e-39 166.0 92 79.3
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.7e-39 166.0 119 69.7
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.3e-39 165.6 118 67.8
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.0e-39 165.2 118 68.6
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.9e-39 164.9 118 68.6
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.9e-39 164.9 107 72.9
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 3.9e-39 164.9 107 72.9
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 3.9e-39 164.9 107 72.9
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 3.9e-39 164.9 107 72.9
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.9e-39 164.9 118 68.6
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.1e-39 164.5 106 78.3
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.6e-39 164.1 107 72.9
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 8.6e-39 163.7 107 72.0
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-38 162.5 108 72.2
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.9e-38 162.5 108 72.2
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.9e-38 162.5 94 78.7
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 2.5e-38 162.2 108 72.2
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 3.3e-38 161.8 111 69.4
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.3e-38 161.8 97 78.4
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 3.3e-38 161.8 107 72.0
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.3e-38 161.8 97 78.4
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 3.3e-38 161.8 103 73.8
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 5.6e-38 161.0 106 73.6
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 5.6e-38 161.0 108 71.3
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 7.3e-38 160.6 103 72.8
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-37 159.8 107 71.0
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-37 159.8 107 71.0
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.2e-37 159.8 100 74.0
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.2e-37 159.8 99 74.7
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.6e-37 159.5 99 75.8
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.1e-37 159.1 96 78.1
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.6e-37 158.3 118 66.1
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 8.1e-37 157.1 99 75.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 8.1e-37 157.1 105 71.4
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 8.1e-37 157.1 105 71.4
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.1e-36 156.8 85 78.8
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.1e-36 156.8 88 81.8
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.1e-36 156.8 91 76.9
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.8e-36 156.0 99 73.7
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.8e-36 156.0 106 72.6
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.2e-35 153.3 103 70.9
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.2e-35 153.3 83 81.9
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 5.8e-35 151.0 92 76.1
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 9.9e-35 150.2 106 69.8
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.9e-34 148.7 91 74.7
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 8.4e-34 147.1 104 67.3
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.1e-33 146.7 83 78.3
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.4e-33 145.6 118 60.2
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.0e-31 140.2 101 68.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 6.6e-31 137.5 81 77.8
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 8.6e-31 137.1 101 67.3
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.9e-30 136.0 114 58.8
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 4.2e-25 118.2 84 65.5
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 7.1e-25 117.5 57 89.5
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.5e-22 109.0 72 75.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 3.3e-22 108.6 64 81.2
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 9.6e-22 107.1 97 56.7
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 4.8e-21 104.8 69 68.1
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 4.8e-21 104.8 71 64.8
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 2.4e-20 102.4 88 58.0
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 3.4e-19 98.6 83 56.6
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.3e-18 96.7 61 77.0
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 6.7e-15 84.3 70 52.9
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-13 80.1 69 60.9
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 3.7e-13 78.6 57 63.2
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 6.9e-12 74.3 64 53.1
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 9.3e-09 63.9 55 56.4
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 2.1e-08 62.8 49 65.3
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 9.6e-06 53.9 116 35.3


User provided reference genes

Program Settings