Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 7.9e-208 726.9 366 100.0
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 8.2e-96 354.8 341 57.8
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.0e-93 347.8 385 53.2
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.9e-92 343.6 379 52.5
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 3.2e-92 342.8 338 54.7
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 3.2e-92 342.8 387 51.2
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 7.2e-92 341.7 327 56.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.4e-90 337.4 376 51.3
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.8e-90 337.0 334 55.1
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.3e-90 336.7 361 51.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 3.0e-90 336.3 334 54.2
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-89 334.0 339 54.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.0e-89 333.6 340 53.8
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 2.0e-89 333.6 339 54.9
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.6e-89 333.2 325 56.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 3.3e-89 332.8 332 54.8
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 5.7e-89 332.0 372 51.9
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 7.4e-89 331.6 372 51.9
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 9.7e-89 331.3 331 54.4
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.3e-88 330.9 352 53.7
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.3e-88 330.9 338 53.6
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.8e-88 329.7 332 53.6
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.8e-88 329.7 379 50.7
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 3.7e-88 329.3 337 53.7
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.7e-88 329.3 332 54.2
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 8.2e-88 328.2 338 53.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.4e-87 327.4 364 51.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.4e-87 326.6 327 56.0
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 2.4e-87 326.6 365 51.8
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 4.1e-87 325.9 334 53.9
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 9.1e-87 324.7 379 50.1
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.5e-86 322.4 371 51.5
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.3e-85 320.9 370 50.3
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.3e-85 320.9 370 50.0
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.3e-85 320.9 370 50.0
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.7e-85 320.5 363 51.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.7e-85 320.5 357 51.3
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.2e-85 320.1 362 51.1
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.9e-85 319.7 333 52.6
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 3.8e-85 319.3 332 53.9
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 6.5e-85 318.5 309 55.7
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 6.5e-85 318.5 338 53.0
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 8.5e-85 318.2 332 53.3
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.1e-84 317.8 374 48.7
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.4e-84 317.4 335 53.1
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.9e-84 317.0 327 55.0
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.5e-84 316.6 327 54.7
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 2.5e-84 316.6 327 53.5
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 3.2e-84 316.2 327 54.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 5.5e-84 315.5 327 52.3
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.1e-83 313.5 335 51.9
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.1e-83 313.5 338 52.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.1e-83 313.5 338 52.4
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.7e-83 313.2 333 53.5
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 7.9e-83 311.6 339 52.5
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.3e-82 310.1 327 53.2
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.0e-82 309.7 350 49.7
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.0e-82 309.7 237 66.7
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 3.9e-82 309.3 329 52.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 5.2e-82 308.9 213 72.8
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.2e-82 308.9 369 49.9
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.2e-82 308.9 325 51.4
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.0e-81 307.0 372 49.2
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 3.3e-81 306.2 324 53.7
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 4.4e-81 305.8 361 48.5
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 4.4e-81 305.8 373 46.4
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.4e-81 305.8 371 47.7
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 5.7e-81 305.4 363 49.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 5.7e-81 305.4 354 49.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 7.4e-81 305.1 332 52.4
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 9.7e-81 304.7 373 46.4
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.3e-80 304.3 367 46.0
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.2e-80 303.5 332 49.4
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.2e-80 303.5 332 52.7
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.7e-80 302.8 332 49.4
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 4.8e-80 302.4 349 47.3
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.8e-80 302.4 324 50.3
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.1e-79 301.2 381 49.6
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.8e-79 300.4 350 48.6
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.8e-79 300.4 325 49.8
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.8e-79 300.4 332 49.1
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.4e-79 300.1 332 48.2
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.1e-79 299.7 371 47.2
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 4.1e-79 299.3 371 45.8
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 4.1e-79 299.3 371 45.8
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 4.1e-79 299.3 371 47.4
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.1e-79 299.3 371 47.4
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 5.3e-79 298.9 325 49.5
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 5.3e-79 298.9 386 46.4
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 7.0e-79 298.5 327 49.5
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 7.0e-79 298.5 327 49.5
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.2e-78 297.7 337 47.5
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.6e-78 297.4 368 47.8
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.5e-78 295.8 371 45.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 4.5e-78 295.8 204 71.6
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.9e-78 295.4 337 47.2
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.7e-78 295.0 309 51.1
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.0e-77 294.7 320 49.1
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.0e-77 294.7 332 46.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.0e-77 294.7 387 47.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 2.2e-77 293.5 332 47.3
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.9e-77 293.1 327 51.4
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 3.8e-77 292.7 204 67.6
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 5.0e-77 292.4 325 48.6
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.1e-76 291.2 311 50.5
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.9e-76 290.4 332 48.2
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.9e-76 290.4 354 46.6
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 7.2e-76 288.5 325 48.9
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 9.4e-76 288.1 336 46.7
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 2.1e-75 287.0 309 49.5
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.0e-75 285.0 342 48.2
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.8e-74 283.9 332 47.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.2e-74 282.3 352 48.3
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 5.2e-74 282.3 366 44.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-73 280.8 355 47.9
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.3e-73 279.6 366 43.7
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 9.7e-73 278.1 219 63.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.7e-73 278.1 338 47.0
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.2e-72 276.9 266 57.9
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.1e-71 274.6 327 47.7
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.0e-70 270.4 363 44.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 8.5e-69 265.0 179 71.5
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.1e-68 264.6 320 46.6
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.1e-68 264.6 320 46.2
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.5e-68 263.5 367 45.2
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 9.4e-68 261.5 344 47.4
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.0e-66 258.1 292 47.6
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 3.0e-66 256.5 335 43.0
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 8.8e-66 255.0 336 44.9
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 6.5e-61 238.8 325 42.2
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.5e-61 238.4 300 46.7
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.8e-55 220.7 203 55.2
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 9.2e-55 218.4 138 76.1
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.9e-52 210.7 131 78.6
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.4e-49 199.9 483 31.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 2.9e-48 196.8 234 45.7
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.4e-47 194.5 298 41.6
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-47 194.1 340 34.7
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-47 194.1 359 34.3
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.8e-42 177.6 246 40.7
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 4.4e-41 172.9 312 33.3
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.6e-38 164.5 336 34.2
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 3.5e-38 163.3 318 34.0
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.0e-33 147.5 216 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.7e-29 134.4 262 32.1
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.5e-25 121.3 118 50.8
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 1.6e-22 111.3 199 35.7
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 3.3e-20 103.6 93 47.3
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 9.6e-20 102.1 63 77.8
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.8e-18 97.8 79 58.2
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.3e-16 91.7 186 37.1
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.9e-13 80.1 76 50.0
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 2.8e-11 73.9 88 42.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.8e-10 71.2 52 67.3
Gohir.A05G174100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 9.3e-07 58.9 169 29.6
Gohir.D05G177100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 9.3e-07 58.9 169 29.6
Gorai.009G182500 Gossypium raimondii HOM05D002234 ORTHO05D002254 9.3e-07 58.9 169 29.6
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.2e-06 58.5 52 63.5
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 6.0e-06 56.2 87 44.8
Gohir.A09G068000 Gossypium hirsutum HOM05D002234 ORTHO05D002254 7.9e-06 55.8 196 26.5
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 7.9e-06 55.8 141 25.5


User provided reference genes

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