Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 2.0e-65 252.3 131 100.0
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 2.1e-62 242.3 130 96.2
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 6.6e-56 220.7 130 89.2
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 1.4e-50 203.0 118 88.1
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 6.0e-49 197.6 111 92.8
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.3e-48 195.7 111 91.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 6.6e-48 194.1 111 91.0
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-47 193.0 111 90.1
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 5.6e-47 191.0 109 91.7
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.8e-43 178.3 105 87.6
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 1.8e-37 159.5 108 79.6
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 1.7e-35 152.9 108 75.0
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 6.4e-35 151.0 86 90.7
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 4.8e-30 134.8 73 90.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 4.9e-27 124.8 69 91.3
Nn2g15526 Nelumbo nucifera HOM05D009845 ORTHO05D006814 8.7e-24 114.0 66 89.4
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 1.1e-23 113.6 76 77.6
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.4e-23 110.9 70 84.3
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 8.1e-22 107.5 63 87.3
Nitab4.5_0000062g0140 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-21 105.5 58 89.7
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.9e-19 98.2 56 89.3
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 6.5e-19 97.8 84 65.5
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 4.2e-18 95.1 93 54.8
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 5.5e-18 94.7 103 51.5
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 7.1e-18 94.4 93 55.9
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 1.2e-17 93.6 92 55.4
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 2.7e-17 92.4 93 53.8
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.0e-16 89.0 46 93.5
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 1.1e-15 87.0 93 49.5
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 1.1e-15 87.0 93 49.5
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 1.1e-15 87.0 93 49.5
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 1.1e-15 87.0 93 49.5
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 2.5e-15 85.9 93 48.4
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 9.6e-15 84.0 61 75.4
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.2e-14 80.9 59 71.2
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.2e-14 80.9 59 71.2
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.2e-14 80.9 59 71.2
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 1.2e-12 77.0 93 45.2
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 2.0e-12 76.3 54 66.7
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 2.0e-12 76.3 86 44.2
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 2.0e-12 76.3 86 44.2
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 2.6e-12 75.9 54 64.8
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 2.6e-12 75.9 93 43.0
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 3.4e-12 75.5 53 64.2
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 5.9e-12 74.7 54 63.0
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.6e-12 74.3 50 80.0
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 1.3e-11 73.6 93 45.2
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 2.9e-11 72.4 93 44.1
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 6.5e-11 71.2 93 43.0
HPP92_004941 Vanilla planifolia HOM05D023446 ORTHO05D025972 1.1e-10 70.5 90 44.4
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 3.5e-09 65.5 48 64.6
SHI33643 Sapria himalayana HOM05D005794 ORTHO05D010624 4.6e-09 65.1 35 80.0
Carub.0004s2920 Capsella rubella HOM05D011069 ORTHO05D010624 7.9e-09 64.3 54 57.4
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 7.9e-09 64.3 35 85.7
CARHR141830 Cardamine hirsuta HOM05D011069 ORTHO05D010624 1.3e-08 63.5 54 57.4
Sp4g28540 Schrenkiella parvula HOM05D011069 ORTHO05D010624 2.3e-08 62.8 71 50.7
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 5.1e-08 61.6 35 88.6
Thhalv10001774m.g Eutrema salsugineum HOM05D011069 ORTHO05D010624 1.1e-07 60.5 50 60.0
DCAR_022854 Daucus carota HOM05D000144 ORTHO05D010624 1.9e-07 59.7 39 74.4
MELO3C000713.2 Cucumis melo HOM05D039398 ORTHO05D006814 5.7e-07 58.2 37 81.1
FvH4_2g07040 Fragaria vesca HOM05D022571 ORTHO05D029580 5.7e-07 58.2 59 47.5
FAN15G1463 Fragaria x ananassa HOM05D022571 ORTHO05D029580 5.7e-07 58.2 59 47.5
FAN27G0090 Fragaria x ananassa HOM05D022571 ORTHO05D029580 5.7e-07 58.2 59 47.5
MELO3C027807.2 Cucumis melo HOM05D039398 ORTHO05D006814 7.4e-07 57.8 37 78.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 7.4e-07 57.8 33 87.9
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 1.6e-06 56.6 39 69.2
AL4G45920 Arabidopsis lyrata HOM05D011069 ORTHO05D010624 2.2e-06 56.2 55 49.1
FAN24G3155 Fragaria x ananassa HOM05D022571 ORTHO05D029580 2.8e-06 55.8 59 45.8
Zm00001eb351000 Zea mays HOM05D023446 ORTHO05D025972 3.7e-06 55.5 90 35.6
AT2G46505 Arabidopsis thaliana HOM05D011069 ORTHO05D010624 4.8e-06 55.1 55 49.1
Os01g0935900 Oryza sativa ssp. japonica HOM05D023446 ORTHO05D025972 4.8e-06 55.1 87 35.6


User provided reference genes

Program Settings