Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 5.9e-170 600.9 328 100.0
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 7.1e-83 311.6 348 60.6
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.3e-80 302.8 366 52.2
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.6e-79 300.4 361 51.0
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 6.2e-79 298.5 351 53.6
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 8.1e-79 298.1 350 54.0
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.9e-75 287.0 330 53.0
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.9e-75 287.0 330 53.0
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.5e-72 277.3 397 43.6
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.7e-71 272.7 334 50.9
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.1e-70 269.6 401 44.4
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.8e-68 262.7 395 42.8
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 6.5e-68 261.9 345 47.5
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 3.0e-65 253.1 408 42.6
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.1e-64 251.1 428 41.6
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.5e-64 250.0 333 47.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 9.7e-64 248.1 357 45.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.2e-63 246.9 382 46.3
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.8e-63 246.5 390 44.4
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.8e-62 243.8 333 46.2
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 3.1e-62 243.0 377 43.0
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.2e-61 241.1 402 41.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.2e-61 241.1 402 41.0
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.2e-61 241.1 399 41.1
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.5e-61 240.7 425 41.2
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.5e-61 240.7 344 45.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 2.6e-61 240.0 402 41.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 4.5e-61 239.2 356 44.7
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 5.9e-61 238.8 385 42.3
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.0e-60 238.0 386 40.2
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.7e-60 237.3 382 42.1
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 2.2e-60 236.9 319 45.5
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 6.5e-60 235.3 387 42.4
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.2e-59 232.6 406 42.9
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 9.4e-59 231.5 344 48.0
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.2e-58 231.1 366 42.9
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.6e-58 230.7 335 45.4
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.6e-58 230.7 379 40.4
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.6e-58 230.7 374 42.0
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 7.9e-58 228.4 391 41.4
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 3.0e-57 226.5 333 47.7
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 3.0e-57 226.5 344 48.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.0e-57 226.5 399 40.6
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 8.8e-57 224.9 343 44.0
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.1e-56 224.6 377 42.7
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.3e-56 223.0 337 49.9
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.7e-56 221.5 395 40.0
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-55 221.1 395 40.0
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.2e-55 220.3 399 41.6
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.2e-55 220.3 419 43.0
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 6.3e-55 218.8 391 40.7
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.8e-54 217.2 398 37.7
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 3.1e-54 216.5 398 38.4
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.5e-53 214.2 391 41.7
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.5e-53 214.2 399 40.1
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.5e-53 214.2 407 38.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.0e-53 213.8 410 40.5
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 7.7e-53 211.8 406 40.6
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-52 210.3 413 39.7
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 2.9e-52 209.9 389 39.1
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 3.8e-52 209.5 395 39.5
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.5e-52 208.8 414 39.9
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.4e-51 207.6 345 43.8
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.4e-51 207.6 345 43.8
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.4e-51 207.6 350 41.4
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.9e-51 207.2 414 39.6
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.2e-51 206.5 414 40.1
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.7e-50 203.4 246 52.4
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 3.6e-50 203.0 344 43.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.0e-49 201.4 421 41.8
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.8e-49 198.4 371 40.2
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 8.8e-49 198.4 371 40.2
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.1e-48 198.0 365 40.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.0e-48 197.2 364 40.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.6e-48 196.8 345 40.6
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 3.7e-47 193.0 291 44.0
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 8.2e-47 191.8 387 38.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-46 190.7 406 37.7
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.5e-45 186.4 405 36.0
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 3.5e-45 186.4 367 41.1
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.5e-45 186.0 326 39.6
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 4.5e-45 186.0 337 39.2
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.0e-44 184.9 375 39.2
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-44 184.5 346 38.4
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-44 184.5 346 38.4
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-44 184.5 346 38.7
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.9e-44 183.3 406 35.7
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.8e-44 183.0 271 43.9
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 5.5e-43 179.1 377 37.4
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 5.5e-43 179.1 331 40.5
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 4.7e-42 176.0 339 40.4
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 4.7e-42 176.0 339 40.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.0e-41 174.9 348 37.1
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.0e-41 173.3 371 37.7
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 6.7e-41 172.2 367 40.6
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 2.0e-40 170.6 421 36.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.7e-39 167.5 377 36.3
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 5.3e-38 162.5 356 36.8
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 9.1e-38 161.8 390 36.7
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.6e-37 161.0 236 50.8
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 5.9e-37 159.1 423 36.2
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.3e-36 157.9 336 37.8
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.7e-36 157.5 342 36.5
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.8e-36 156.4 350 36.9
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 5.0e-36 156.0 345 37.7
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.5e-36 155.6 333 39.0
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 8.5e-36 155.2 333 39.0
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 3.2e-35 153.3 412 36.4
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 7.2e-35 152.1 395 34.9
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.2e-34 151.4 105 67.6
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 6.1e-34 149.1 411 33.8
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 3.0e-33 146.7 384 35.9
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 5.2e-33 146.0 379 34.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.2e-32 144.8 245 44.9
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 4.4e-32 142.9 428 34.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 9.8e-32 141.7 402 33.1
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 3.7e-31 139.8 199 48.7
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.4e-30 137.9 371 32.6
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 7.0e-30 135.6 247 41.3
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.6e-29 134.4 298 37.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.0e-29 134.0 452 29.0
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.7e-28 131.0 399 32.1
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.5e-28 129.0 357 33.9
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.1e-27 128.3 237 42.6
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 4.2e-27 126.3 237 42.6
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 5.5e-27 125.9 411 30.7
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.4e-25 121.3 235 37.9
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 5.2e-25 119.4 239 39.7
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 5.2e-25 119.4 239 39.7
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 5.2e-25 119.4 239 39.7
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 5.7e-24 115.9 334 33.2
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 6.3e-23 112.5 284 32.0
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.4e-22 110.5 408 28.9
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.4e-22 110.5 260 39.6
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 3.1e-22 110.2 246 39.0
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 9.2e-22 108.6 408 28.7
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 2.0e-21 107.5 467 28.5
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.7e-21 107.1 245 38.8
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 3.5e-21 106.7 410 28.8
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 3.8e-20 103.2 330 31.5
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 6.6e-20 102.4 394 32.2
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.5e-19 101.3 226 38.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.3e-19 100.1 108 53.7
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 3.6e-18 96.7 241 35.3
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 4.7e-18 96.3 236 36.9
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 4.0e-17 93.2 108 45.4
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 3.4e-16 90.1 238 39.5
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.1e-14 83.2 397 29.0
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.1e-14 83.2 146 39.0
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-13 81.6 241 36.9
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 6.6e-12 75.9 203 29.6
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 8.6e-12 75.5 419 26.0
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.1e-11 75.1 294 27.2
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 1.1e-11 75.1 132 37.9
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.8e-10 70.5 102 46.1
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.0e-08 64.3 109 37.6


User provided reference genes

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