Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 0.0e+00 1307.4 677 100.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 8.8e-237 823.9 674 66.0
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 3.1e-226 788.9 660 64.4
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 7.0e-226 787.7 671 62.3
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 3.2e-223 778.9 657 62.9
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 2.8e-222 775.8 659 62.5
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.0e-221 773.9 676 62.7
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.2e-220 770.4 659 62.5
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.3e-216 756.9 674 60.4
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.3e-215 752.3 662 62.2
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 4.0e-213 745.3 677 59.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.2e-212 743.8 666 61.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 6.4e-211 738.0 660 59.4
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 3.2e-210 735.7 659 59.9
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 4.1e-210 735.3 667 60.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.5e-209 732.3 659 60.2
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 3.5e-209 732.3 679 59.2
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 6.6e-208 728.0 665 60.5
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.9e-207 726.5 671 58.9
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.1e-206 723.0 658 59.3
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 2.9e-203 712.6 663 58.7
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.4e-202 709.5 658 58.7
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 1.1e-197 694.1 658 57.3
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 6.8e-197 691.4 658 56.8
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.3e-195 687.2 601 62.1
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.1e-194 684.1 678 55.5
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 2.4e-194 682.9 657 55.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 5.4e-194 681.8 665 56.5
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 7.1e-194 681.4 658 55.9
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 2.7e-193 679.5 673 55.3
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 6.0e-193 678.3 658 55.9
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.3e-192 677.2 658 55.6
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.3e-192 676.4 671 55.4
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.5e-191 673.7 661 55.4
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.9e-191 673.3 661 55.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 2.1e-190 669.8 659 55.8
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 4.7e-190 668.7 664 55.1
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 3.4e-188 662.5 667 55.0
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 7.6e-188 661.4 666 54.7
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.9e-187 659.4 650 56.2
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 4.9e-187 658.7 675 53.8
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 4.9e-187 658.7 670 54.0
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 6.4e-187 658.3 654 54.7
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 6.4e-187 658.3 518 67.6
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.1e-186 657.5 660 54.5
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.9e-186 656.8 595 61.3
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.9e-186 656.8 669 54.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 2.4e-186 656.4 656 55.2
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 2.4e-186 656.4 656 55.2
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 3.2e-186 656.0 656 55.2
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 3.2e-186 656.0 650 55.4
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 5.4e-186 655.2 652 55.4
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.6e-185 653.7 590 60.7
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 2.7e-185 652.9 647 56.4
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 2.7e-185 652.9 660 55.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 3.5e-185 652.5 659 54.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 1.0e-184 651.0 656 54.1
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.3e-184 649.8 654 54.0
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 5.1e-184 648.7 657 53.9
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.9e-183 646.7 677 52.6
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 4.3e-183 645.6 661 53.6
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.1e-182 643.3 670 53.0
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.8e-181 640.2 693 53.7
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.0e-180 636.7 544 62.1
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.4e-180 635.6 544 61.9
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 5.8e-180 635.2 699 51.5
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 9.9e-180 634.4 676 52.1
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 9.9e-180 634.4 656 53.4
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 4.9e-179 632.1 624 56.2
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 8.4e-179 631.3 658 52.6
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.2e-178 629.0 676 51.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.6e-177 627.1 648 53.4
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 5.1e-176 622.1 650 53.8
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.1e-176 622.1 635 52.9
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 5.1e-176 622.1 690 50.1
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.2e-172 610.9 604 56.5
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 2.9e-171 606.3 675 51.6
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.1e-170 604.4 661 50.2
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.2e-170 602.8 658 51.4
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.9e-167 593.6 664 49.4
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 4.3e-167 592.4 605 55.0
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.1e-165 587.8 519 59.3
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 3.4e-164 582.8 565 56.3
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.4e-162 576.6 564 55.5
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.3e-158 564.3 519 57.4
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.4e-157 560.8 677 47.1
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.5e-156 557.4 657 49.6
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 6.0e-153 545.4 470 62.6
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.3e-152 544.3 474 61.0
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.3e-152 544.3 658 47.0
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 3.9e-152 542.7 474 61.4
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 3.1e-149 533.1 676 45.0
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.5e-148 530.8 665 47.5
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 7.4e-143 511.9 634 47.9
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 6.7e-136 488.8 687 42.6
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 4.2e-130 469.5 404 64.1
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.1e-125 454.9 659 42.3
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.0e-120 438.3 392 57.4
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.9e-115 420.2 619 42.3
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 3.1e-109 400.2 480 46.9
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.7e-102 377.9 662 38.8
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 2.0e-87 327.8 682 32.0
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.9e-85 321.2 665 30.2
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.4e-80 305.1 410 44.6
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.2e-76 292.0 542 33.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 6.0e-76 289.7 267 57.7
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 6.2e-73 279.6 516 37.4
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 6.2e-73 279.6 516 37.4
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 6.2e-73 279.6 371 47.2
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 4.0e-72 276.9 659 29.1
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 4.2e-69 266.9 383 42.8
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.0e-46 192.6 260 43.5
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 8.4e-46 189.5 260 43.1
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.8e-41 174.5 150 59.3
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 6.9e-40 169.9 147 59.9
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.7e-38 165.2 134 66.4
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 3.2e-37 161.0 211 46.9
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 5.5e-37 160.2 193 49.2
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.5e-36 157.5 222 41.9
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 7.9e-36 156.4 221 43.4
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.0e-35 156.0 404 27.5
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.2e-33 148.3 140 55.0
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 4.2e-29 134.0 165 44.8
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 5.5e-29 133.7 168 47.0
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.1e-28 131.7 439 28.2
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 3.0e-27 127.9 171 42.1
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.5e-26 125.6 407 30.0
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 4.8e-25 120.6 328 27.7
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 1.4e-24 119.0 272 33.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.1e-16 91.3 90 54.4
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 1.3e-14 85.9 81 56.8
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.2e-14 85.1 83 55.4
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 2.9e-14 84.7 123 39.8
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.8e-14 84.3 145 35.2
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 5.0e-14 84.0 56 69.6
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 2.7e-12 78.2 73 53.4
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 2.3e-11 75.1 117 39.3
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 5.7e-10 70.5 128 35.2
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 9.7e-10 69.7 73 52.1
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.2e-07 62.8 47 63.8
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.6e-07 61.6 88 47.7
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 7.7e-07 60.1 43 60.5
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.0e-06 59.7 37 73.0
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.0e-06 59.7 62 48.4


User provided reference genes

Program Settings