Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 0.0e+00 1331.6 641 100.0
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.0e-306 1056.2 641 76.8
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 1.1e-305 1052.7 641 77.2
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.7e-304 1048.1 641 76.9
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 6.1e-304 1047.0 641 76.6
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 6.1e-304 1047.0 641 76.9
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 7.9e-304 1046.6 641 76.9
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 8.7e-303 1043.1 641 76.4
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 4.3e-302 1040.8 617 79.4
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 4.3e-302 1040.8 643 76.0
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 3.7e-301 1037.7 641 75.7
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.8e-300 1035.4 641 75.5
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 4.5e-299 1030.8 640 74.7
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 4.5e-299 1030.8 640 74.7
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.3e-298 1029.2 641 74.7
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.6e-296 1022.3 641 73.9
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 6.1e-296 1020.4 641 74.4
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 6.1e-296 1020.4 641 74.6
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 1.0e-295 1019.6 641 73.9
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.4e-295 1019.2 641 74.3
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 2.0e-294 1015.4 641 74.1
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 5.7e-294 1013.8 642 73.8
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 9.7e-294 1013.1 642 73.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 6.3e-293 1010.4 642 73.5
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.5e-291 1005.7 641 74.1
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 2.0e-291 1005.4 641 74.4
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.7e-290 1002.3 642 73.4
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 6.5e-290 1000.3 641 73.9
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.1e-289 999.6 642 72.6
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.8e-287 992.3 642 72.7
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 2.3e-287 991.9 642 71.7
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.1e-284 983.0 641 72.7
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.2e-283 979.5 602 76.1
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.0e-283 978.8 641 72.2
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 2.6e-283 978.4 643 73.1
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.6e-283 978.4 643 71.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 3.2e-281 971.5 642 71.7
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 2.1e-280 968.8 641 69.7
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 9.1e-276 953.4 641 70.8
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 2.5e-273 945.3 612 72.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 3.2e-273 944.9 645 69.3
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 4.2e-273 944.5 642 68.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 1.7e-261 906.0 630 67.3
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 7.3e-249 864.0 647 64.6
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 8.3e-245 850.5 644 62.7
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 1.5e-238 829.7 646 62.1
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.0e-231 805.1 642 60.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 4.1e-228 795.0 542 70.7
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 3.5e-227 792.0 649 59.0
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 2.3e-226 789.3 649 58.6
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 5.1e-226 788.1 646 58.7
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 5.1e-226 788.1 646 58.7
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 2.8e-224 782.3 644 57.9
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.5e-217 760.0 647 58.0
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.0e-214 749.6 553 64.4
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 5.4e-212 741.5 638 56.9
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 2.1e-211 739.6 649 55.9
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.3e-177 625.9 648 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.1e-171 606.7 649 46.7
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 5.3e-167 592.0 390 71.3
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 9.1e-167 591.3 651 46.1
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 2.3e-130 470.3 311 71.4
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 7.5e-129 465.3 744 37.1
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 4.3e-124 449.5 280 77.5
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.4e-114 417.9 247 76.5
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 1.0e-109 401.7 244 75.4
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 1.7e-109 401.0 283 68.6
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 9.3e-103 378.6 241 72.2
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 3.9e-101 373.2 279 62.4
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 5.1e-101 372.9 279 62.4
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 3.4e-97 360.1 224 75.4
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 9.9e-97 358.6 259 64.5
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 1.7e-96 357.8 273 62.3
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 4.9e-96 356.3 260 63.8
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 6.2e-91 339.3 260 61.2
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 4.9e-88 329.7 268 58.6
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 6.9e-66 256.1 256 54.7
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 4.1e-58 230.3 170 65.3
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.2e-49 202.2 130 75.4
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 1.4e-42 178.7 191 52.9
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.6e-41 175.3 382 33.5
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 4.5e-41 173.7 375 34.1
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 3.8e-40 170.6 370 33.2
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.8e-40 170.6 366 34.2
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 7.2e-39 166.4 372 32.8
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.6e-38 165.2 369 33.1
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.1e-38 164.9 369 33.9
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.7e-38 163.7 375 31.2
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 6.1e-38 163.3 375 31.2
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 6.1e-38 163.3 376 33.2
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 8.0e-38 162.9 384 32.3
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 8.0e-38 162.9 377 30.2
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.0e-37 162.5 372 32.0
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 1.0e-37 162.5 366 33.3
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.4e-37 162.2 374 32.4
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 5.2e-37 160.2 371 30.5
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 3.4e-36 157.5 375 32.0
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.4e-36 157.1 372 30.4
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 5.7e-36 156.8 374 32.6
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.3e-35 155.6 372 31.7
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.7e-35 155.2 375 30.4
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.7e-35 155.2 375 30.4
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.7e-35 155.2 372 29.3
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 3.7e-35 154.1 371 31.3
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 3.7e-35 154.1 371 31.3
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 3.7e-35 154.1 398 30.9
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.7e-35 154.1 353 28.3
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.9e-35 153.7 371 30.7
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 4.9e-35 153.7 367 31.1
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 4.9e-35 153.7 372 32.3
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 4.9e-35 153.7 360 32.5
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 6.3e-35 153.3 369 30.6
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 6.3e-35 153.3 374 30.2
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.1e-34 152.5 373 31.4
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.1e-34 152.5 372 33.1
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.1e-34 152.5 371 32.6
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.4e-34 152.1 394 31.7
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.4e-34 152.1 374 29.4
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.8e-34 151.8 377 30.5
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.4e-34 151.4 373 32.2
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 2.4e-34 151.4 373 31.4
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.4e-34 151.4 372 30.4
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 3.1e-34 151.0 374 29.4
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 5.4e-34 150.2 375 31.5
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 5.4e-34 150.2 370 32.4
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.2e-33 149.1 379 31.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.2e-33 149.1 373 30.8
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.6e-33 148.7 375 33.1
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 2.0e-33 148.3 367 31.9
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.7e-33 147.9 386 29.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 3.5e-33 147.5 363 32.5
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 5.9e-33 146.7 373 30.3
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 5.9e-33 146.7 402 31.3
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.0e-32 146.0 373 30.6
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.3e-32 145.6 375 30.1
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.3e-32 145.6 373 29.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.3e-32 144.8 367 31.3
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 2.9e-32 144.4 368 31.0
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 8.6e-32 142.9 376 30.3
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 8.6e-32 142.9 359 31.5
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.1e-31 142.5 375 30.4
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.5e-31 141.4 373 30.6
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.5e-31 141.4 394 30.7
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 3.3e-31 141.0 373 29.8
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 4.2e-31 140.6 375 30.7
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 5.5e-31 140.2 376 29.8
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.8e-30 137.9 367 30.5
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.8e-30 137.9 375 30.7
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 4.7e-30 137.1 372 29.6
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.0e-29 136.0 325 30.5
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.4e-29 135.6 306 31.4
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 5.2e-29 133.7 352 31.0
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 5.2e-29 133.7 109 59.6
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 6.8e-29 133.3 359 31.5
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 6.8e-29 133.3 415 28.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 6.8e-29 133.3 315 29.2
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 4.4e-28 130.6 367 30.0
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 4.4e-28 130.6 313 32.9
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 5.7e-28 130.2 318 30.5
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 5.7e-28 130.2 319 31.3
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 7.5e-28 129.8 154 46.1
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 9.8e-28 129.4 404 29.5
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.3e-27 129.0 359 31.2
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.7e-27 128.6 371 31.3
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.8e-27 127.9 323 30.7
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 4.9e-27 127.1 374 29.4
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 4.9e-27 127.1 342 31.0
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 8.3e-27 126.3 352 31.0
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 9.2e-26 122.9 379 29.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 3.5e-25 120.9 247 33.6
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.7e-24 118.6 240 32.9
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 6.6e-24 116.7 302 31.5
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.1e-23 115.9 224 34.4
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 4.3e-23 114.0 354 28.8
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 5.6e-23 113.6 291 29.2
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.4e-21 109.0 290 31.7
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.5e-20 105.5 243 32.5
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 4.9e-19 100.5 226 32.7
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 5.4e-18 97.1 371 26.7
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.6e-17 95.5 430 24.7
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.3e-16 92.4 163 38.0
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.3e-16 91.7 241 31.5
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.7e-11 75.5 219 28.8
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 4.1e-10 70.9 95 42.1
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.5e-09 67.8 300 25.7


User provided reference genes

Program Settings