Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033128.1 Olea europaea HOM05D004080 ORTHO05D004855 3.8e-91 338.2 176 100.0
MSTRG.22520 Avicennia marina HOM05D004080 ORTHO05D004855 5.6e-50 201.4 152 73.0
Oeu006748.1 Olea europaea HOM05D004080 ORTHO05D004855 9.5e-50 200.7 154 75.3
Peaxi162Scf00038g02253 Petunia axillaris HOM05D004080 ORTHO05D004855 4.0e-48 195.3 151 75.5
Nitab4.5_0008798g0030 Nicotiana tabacum HOM05D004080 ORTHO05D004855 5.2e-48 194.9 151 73.5
Nitab4.5_0003981g0090 Nicotiana tabacum HOM05D004080 ORTHO05D004855 2.2e-46 189.5 151 72.8
Migut.D00915 Erythranthe guttata HOM05D004080 ORTHO05D004855 1.4e-45 186.8 159 65.4
SalBow6G1171 Salvia bowleyana HOM05D004080 ORTHO05D004855 1.4e-45 186.8 151 66.2
Cc04_g00780 Coffea canephora HOM05D004080 ORTHO05D004855 4.1e-45 185.3 153 70.6
PGSC0003DMG400028851 Solanum tuberosum HOM05D004080 ORTHO05D004855 4.1e-45 185.3 152 68.4
SGA_v2.0_scaffold4G02093 Striga asiatica HOM05D004080 ORTHO05D004855 7.8e-44 181.0 155 65.8
Rhsim08G0244100 Rhododendron simsii HOM05D004080 ORTHO05D004855 2.3e-43 179.5 166 65.7
Nitab4.5_0000357g0150 Nicotiana tabacum HOM05D004080 ORTHO05D004855 3.0e-43 179.1 151 68.2
CAN.G1073.7 Capsicum annuum HOM05D004080 ORTHO05D004855 3.9e-43 178.7 152 69.1
Haze_16125 Corylus avellana HOM05D004080 ORTHO05D004855 6.6e-43 177.9 162 64.8
ClCG09G001360 Citrullus lanatus HOM05D004080 ORTHO05D004855 1.1e-42 177.2 151 68.9
Hma1.2p1_0229F.1_g097040 Hydrangea macrophylla HOM05D004080 ORTHO05D004855 3.3e-42 175.6 153 69.3
TWI14G1096 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 4.3e-42 175.3 153 68.0
PGR102G0694 Punica granatum HOM05D004080 ORTHO05D004855 7.3e-42 174.5 153 66.7
CSS0029048 Camellia sinensis var. sinensis HOM05D004080 ORTHO05D004855 9.5e-42 174.1 156 65.4
CsaV3_7G033970 Cucumis sativus L. HOM05D004080 ORTHO05D004855 1.6e-41 173.3 151 66.9
MD17G1153700 Malus domestica HOM05D004080 ORTHO05D004855 1.6e-41 173.3 157 65.0
TWI23G0788 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 1.6e-41 173.3 153 66.0
GSVIVG01016675001 Vitis vinifera HOM05D004080 ORTHO05D004855 2.1e-41 172.9 151 67.5
Oeu013440.1 Olea europaea HOM05D004080 ORTHO05D004855 2.8e-41 172.6 153 64.1
MELO3C024310.2 Cucumis melo HOM05D004080 ORTHO05D004855 4.7e-41 171.8 151 66.9
MD09G1173400 Malus domestica HOM05D004080 ORTHO05D004855 6.2e-41 171.4 157 63.7
Manes.11G013200 Manihot esculenta HOM05D004080 ORTHO05D004855 6.2e-41 171.4 152 66.4
Sed0028223 Sechium edule HOM05D004080 ORTHO05D004855 8.1e-41 171.0 153 66.0
Cfa003466 Carpinus fangiana HOM05D004080 ORTHO05D004855 1.1e-40 170.6 161 62.1
Sabra01G0129400 Salix brachista HOM05D004080 ORTHO05D004855 1.1e-40 170.6 153 66.0
Lj9A537G36 Lonicera japonica HOM05D004080 ORTHO05D004855 1.4e-40 170.2 154 65.6
vmacro15082 Vaccinium macrocarpon HOM05D004080 ORTHO05D004855 3.1e-40 169.1 169 60.4
Sopen12g024050 Solanum pennellii HOM05D004080 ORTHO05D004855 4.0e-40 168.7 158 62.7
Prupe.3G031500 Prunus persica HOM05D004080 ORTHO05D004855 5.2e-40 168.3 153 65.4
Solyc12g049580.2 Solanum lycopersicum HOM05D004080 ORTHO05D004855 6.8e-40 167.9 162 61.1
THA.LOC104815600 Tarenaya hassleriana HOM05D004080 ORTHO05D004855 1.2e-39 167.2 159 62.9
Potri.001G163300 Populus trichocarpa HOM05D004080 ORTHO05D004855 1.5e-39 166.8 153 65.4
Dinv37823 Davidia involucrata HOM05D004080 ORTHO05D004855 2.6e-39 166.0 158 65.2
Gohir.D05G143600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 2.6e-39 166.0 164 61.0
Sopen12g024060 Solanum pennellii HOM05D004080 ORTHO05D004855 2.6e-39 166.0 158 61.4
Potri.003G072100 Populus trichocarpa HOM05D004080 ORTHO05D004855 3.4e-39 165.6 152 64.5
Gohir.A06G194600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 4.4e-39 165.2 158 63.3
CANSAT56G1857 Cannabis sativa HOM05D004080 ORTHO05D004855 7.5e-39 164.5 154 63.6
Gohir.D06G202300 Gossypium hirsutum HOM05D004080 ORTHO05D004855 9.9e-39 164.1 158 62.7
Gorai.010G236200 Gossypium raimondii HOM05D004080 ORTHO05D004855 9.9e-39 164.1 158 62.7
Sabra03G0042900 Salix brachista HOM05D004080 ORTHO05D004855 1.3e-38 163.7 152 64.5
DCAR_007657 Daucus carota HOM05D004080 ORTHO05D004855 2.2e-38 162.9 153 66.0
COL.COLO4_30858 Corchorus olitorius HOM05D004080 ORTHO05D004855 3.7e-38 162.2 147 68.0
TAR626G1035 Trochodendron aralioides HOM05D004080 ORTHO05D004855 3.7e-38 162.2 151 64.9
Lsat_1_v5_gn_1_39161 Lactuca sativa HOM05D004080 ORTHO05D004855 6.4e-38 161.4 156 65.4
Gorai.009G147500 Gossypium raimondii HOM05D004080 ORTHO05D004855 8.3e-38 161.0 163 60.1
FAN05G3978 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.4e-37 160.2 157 63.1
QL05p001373 Quercus lobata HOM05D004080 ORTHO05D004855 1.4e-37 160.2 165 60.0
TAR383G0367 Trochodendron aralioides HOM05D004080 ORTHO05D004855 1.4e-37 160.2 155 63.2
FvH4_6g35750 Fragaria vesca HOM05D004080 ORTHO05D004855 1.9e-37 159.8 157 63.1
FAN09G4052 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.9e-37 159.8 157 63.1
FAN14G5022 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.9e-37 159.8 157 63.1
Cpa.g.sc25.185 Carica papaya HOM05D004080 ORTHO05D004855 4.1e-37 158.7 159 61.6
Lsat_1_v5_gn_4_92141 Lactuca sativa HOM05D004080 ORTHO05D004855 4.1e-37 158.7 156 65.4
RcHm_v2.0_Chr2g0147751 Rosa chinensis HOM05D004080 ORTHO05D004855 7.1e-37 157.9 158 63.9
SalBow7G2362 Salvia bowleyana HOM05D004080 ORTHO05D004855 7.1e-37 157.9 108 77.8
BcaB03g14982 Brassica carinata HOM05D004080 ORTHO05D004855 1.2e-36 157.1 152 63.2
FAN02G3159 Fragaria x ananassa HOM05D004080 ORTHO05D004855 2.1e-36 156.4 157 61.8
Nn6g35722 Nelumbo nucifera HOM05D004080 ORTHO05D004855 2.7e-36 156.0 156 60.3
arahy.Tifrunner.gnm1.ann1.Z4XL8W Arachis hypogaea HOM05D004080 ORTHO05D004855 6.0e-36 154.8 151 60.3
arahy.Tifrunner.gnm1.ann1.L3RKN8 Arachis hypogaea HOM05D004080 ORTHO05D004855 7.8e-36 154.5 151 60.3
AT1G72340 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.0e-35 154.1 153 63.4
Aa31LG10G1450 Aethionema arabicum HOM05D004080 ORTHO05D004855 1.7e-35 153.3 156 60.9
CiPaw.02G131500 Carya illinoinensis HOM05D004080 ORTHO05D004855 3.9e-35 152.1 152 62.5
Sp5g27430 Schrenkiella parvula HOM05D004080 ORTHO05D004855 3.9e-35 152.1 151 61.6
BolC6t36718H Brassica oleracea HOM05D004080 ORTHO05D004855 5.1e-35 151.8 153 60.1
Lj1g0023220 Lotus japonicus HOM05D004080 ORTHO05D004855 5.1e-35 151.8 151 59.6
Carub.0002s1920 Capsella rubella HOM05D004080 ORTHO05D004855 6.6e-35 151.4 153 61.4
BraA07t31412Z Brassica rapa HOM05D004080 ORTHO05D004855 8.6e-35 151.0 151 60.3
Ciclev10025790m.g Citrus clementina HOM05D004080 ORTHO05D004855 8.6e-35 151.0 151 60.9
AL2G32020 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 1.1e-34 150.6 153 59.5
Duzib192G0957 Durio zibethinus HOM05D004080 ORTHO05D004855 1.1e-34 150.6 157 59.2
Gohir.A05G141401 Gossypium hirsutum HOM05D004080 ORTHO05D004855 1.1e-34 150.6 116 74.1
BcaC03g15371 Brassica carinata HOM05D004080 ORTHO05D004855 1.5e-34 150.2 151 62.9
C02p29850 Brassica napus HOM05D004080 ORTHO05D004855 1.5e-34 150.2 151 62.9
BcaC08g46690 Brassica carinata HOM05D004080 ORTHO05D004855 1.9e-34 149.8 152 61.8
C06p46700 Brassica napus HOM05D004080 ORTHO05D004855 1.9e-34 149.8 152 61.8
BolC2t09033H Brassica oleracea HOM05D004080 ORTHO05D004855 1.9e-34 149.8 151 60.9
BolC6t39715H Brassica oleracea HOM05D004080 ORTHO05D004855 1.9e-34 149.8 152 61.8
Thecc.06G129400 Theobroma cacao HOM05D004080 ORTHO05D004855 1.9e-34 149.8 162 59.9
EL10Ac7g16485 Beta vulgaris HOM05D004080 ORTHO05D004855 2.5e-34 149.4 166 59.6
Thhalv10018714m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 2.5e-34 149.4 151 62.9
Duzib235G0388 Durio zibethinus HOM05D004080 ORTHO05D004855 3.3e-34 149.1 160 58.8
HPP92_011050 Vanilla planifolia HOM05D004080 ORTHO05D004855 4.3e-34 148.7 161 57.1
A07p38520 Brassica napus HOM05D004080 ORTHO05D004855 7.3e-34 147.9 151 59.6
BcaC08g44141 Brassica carinata HOM05D004080 ORTHO05D004855 9.5e-34 147.5 151 58.3
BcaC08g43566 Brassica carinata HOM05D004080 ORTHO05D004855 1.6e-33 146.7 151 58.3
C06p09640 Brassica napus HOM05D004080 ORTHO05D004855 1.6e-33 146.7 151 58.3
BolC6t36036H Brassica oleracea HOM05D004080 ORTHO05D004855 1.6e-33 146.7 151 58.3
Carub.0001s4316 Capsella rubella HOM05D004080 ORTHO05D004855 2.1e-33 146.4 151 60.3
Ah.08g217320 Amaranthus hybridus HOM05D004080 ORTHO05D004855 2.8e-33 146.0 153 57.5
A02p17960 Brassica napus HOM05D004080 ORTHO05D004855 3.6e-33 145.6 151 60.3
CARHR065250 Cardamine hirsuta HOM05D004080 ORTHO05D004855 3.6e-33 145.6 152 57.9
CARHR044200 Cardamine hirsuta HOM05D004080 ORTHO05D004855 6.2e-33 144.8 151 57.6
Sc12g0010900 Simmondsia chinensis HOM05D004080 ORTHO05D004855 8.1e-33 144.4 153 60.1
Aa31LG4G2700 Aethionema arabicum HOM05D001342 ORTHO05D004855 1.1e-32 144.1 153 60.1
BraA02t06843Z Brassica rapa HOM05D004080 ORTHO05D004855 1.4e-32 143.7 151 59.6
Nitab4.5_0004589g0010 Nicotiana tabacum HOM05D004080 ORTHO05D004855 1.4e-32 143.7 142 62.0
AT1G53880 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.8e-32 143.3 153 59.5
AT1G53900 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.8e-32 143.3 153 59.5
AUR62001413 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.8e-32 143.3 161 57.1
Eucgr.J02599 Eucalyptus grandis HOM05D004080 ORTHO05D004855 2.4e-32 142.9 181 52.5
Thhalv10011350m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 4.0e-32 142.1 151 57.6
AL1G62590 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 8.9e-32 141.0 151 58.9
Phvul.009G262000 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 1.2e-31 140.6 151 57.6
VMungo1309G1832 Vigna mungo HOM05D004080 ORTHO05D004855 1.5e-31 140.2 151 55.6
SGA_v2.0_scaffold71G23916 Striga asiatica HOM05D004080 ORTHO05D004855 2.6e-31 139.4 156 56.4
Atru.chr1.4109 Acer truncatum HOM05D004080 ORTHO05D004855 4.4e-31 138.7 162 54.9
A06p00710 Brassica napus HOM05D004080 ORTHO05D004855 4.4e-31 138.7 151 57.6
Actinidia24431 Actinidia chinensis HOM05D004080 ORTHO05D004855 9.9e-31 137.5 108 71.3
Lalb_Chr18g0044901 Lupinus albus HOM05D004080 ORTHO05D004855 1.7e-30 136.7 156 55.8
Glyma.03G263500 Glycine max HOM05D004080 ORTHO05D004855 2.9e-30 136.0 152 55.9
Glyma.19G262500 Glycine max HOM05D004080 ORTHO05D004855 2.9e-30 136.0 151 55.0
BcaB07g33281 Brassica carinata HOM05D004080 ORTHO05D004855 1.1e-29 134.0 151 53.0
Sp1g40370 Schrenkiella parvula HOM05D004080 ORTHO05D004855 1.1e-29 134.0 119 67.2
BcaB05g24748 Brassica carinata HOM05D004080 ORTHO05D004855 1.6e-28 130.2 108 70.4
PSO724G0358 Papaver somniferum HOM05D004080 ORTHO05D004855 1.6e-28 130.2 151 54.3
CDE09G1267 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 1.0e-27 127.5 109 67.9
PSO135G0363 Papaver somniferum HOM05D004080 ORTHO05D004855 6.6e-27 124.8 151 51.7
arahy.Tifrunner.gnm1.ann1.E9FGF4 Arachis hypogaea HOM05D004080 ORTHO05D004855 1.1e-24 117.5 110 63.6
arahy.Tifrunner.gnm1.ann1.I2K3PU Arachis hypogaea HOM05D004080 ORTHO05D004855 1.1e-24 117.5 110 63.6
ATR0099G064 Amborella trichopoda HOM05D004080 ORTHO05D004855 5.2e-24 115.2 153 53.6
Ca_23429_v3 Cicer arietinum L. HOM05D004080 ORTHO05D004855 5.2e-24 115.2 105 61.9
Medtr8g023040 Medicago truncatula HOM05D004080 ORTHO05D004855 5.8e-23 111.7 105 59.0
Psat4g165760 Pisum sativum HOM05D004080 ORTHO05D004855 5.8e-23 111.7 105 61.9
TPR.G18158 Trifolium pratense HOM05D004080 ORTHO05D004855 7.6e-23 111.3 116 56.9
Dinv17514 Davidia involucrata HOM05D004080 ORTHO05D004855 9.9e-23 110.9 92 67.4
Lalb_Chr17g0343291 Lupinus albus HOM05D004080 ORTHO05D004855 4.9e-22 108.6 102 61.8
Aqoxy7G04172 Aquilegia oxysepala HOM05D004080 ORTHO05D004855 6.4e-22 108.2 92 72.8
SEGI_15203 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 6.4e-22 108.2 123 52.8
Phvul.010G123700 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 1.6e-20 103.6 101 60.4
Lj3g0001023 Lotus japonicus HOM05D004080 ORTHO05D004855 6.0e-20 101.7 102 55.9
AUR62025622 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.3e-19 100.5 84 69.0
Glyma.07G045300 Glycine max HOM05D004080 ORTHO05D004855 1.3e-19 100.5 101 57.4
Zm00001eb138200 Zea mays HOM05D004080 ORTHO05D004855 1.3e-19 100.5 120 54.2
Os12g0497400 Oryza sativa ssp. japonica HOM05D004080 ORTHO05D004855 1.6e-17 93.6 111 53.2
SEGI_17135 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 6.9e-16 88.2 88 59.1
Mapoly0002s0094 Marchantia polymorpha HOM05D004080 ORTHO05D004855 1.4e-13 80.5 142 40.1
Pp3c3_36280 Physcomitrium patens HOM05D004080 ORTHO05D004855 1.9e-13 80.1 88 54.5
ECA247G2052 Erigeron canadensis HOM05D004080 ORTHO05D004855 2.4e-13 79.7 81 65.4
Pp3c5_19430 Physcomitrium patens HOM05D004080 ORTHO05D004855 5.4e-13 78.6 94 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1526 Anthoceros agrestis HOM05D004080 ORTHO05D004855 7.1e-13 78.2 90 53.3
Pp3c16_17800 Physcomitrium patens HOM05D004080 ORTHO05D004855 3.9e-11 72.4 94 52.1
SMO203G0081 Selaginella moellendorffii HOM05D004080 ORTHO05D004855 4.3e-10 68.9 51 68.6


User provided reference genes

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