Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 5.7e-27 123.6 68 100.0
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.3e-18 93.6 68 77.9
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.3e-18 93.6 68 77.9
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.3e-18 93.2 68 76.5
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.3e-18 93.2 68 76.5
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.8e-17 92.0 63 82.5
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.8e-17 92.0 63 82.5
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.1e-17 91.3 61 83.6
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.6e-16 89.0 68 77.9
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.7e-16 88.2 68 79.4
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 7.7e-16 86.7 68 75.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.0e-15 86.3 65 72.3
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.0e-15 86.3 64 79.7
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.0e-15 86.3 68 76.5
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.0e-15 86.3 68 67.6
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 2.2e-15 85.1 68 70.6
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 6.5e-15 83.6 65 75.4
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 8.5e-15 83.2 64 78.1
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.5e-14 82.4 68 73.5
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 1.9e-14 82.0 64 71.9
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.5e-14 81.6 65 73.8
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.2e-14 81.3 68 72.1
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.5e-14 80.5 69 69.6
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 5.5e-14 80.5 68 72.1
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 7.2e-14 80.1 68 72.1
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 7.2e-14 80.1 64 75.0
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 9.4e-14 79.7 71 66.2
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 9.4e-14 79.7 65 72.3
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 9.4e-14 79.7 68 72.1
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.2e-13 79.3 68 72.1
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.2e-13 79.3 68 75.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.6e-13 79.0 67 67.2
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.1e-13 78.6 71 66.2
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 3.6e-13 77.8 73 67.1
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 6.1e-13 77.0 70 65.7
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.1e-13 77.0 65 72.3
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 8.0e-13 76.6 68 69.1
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.0e-13 76.6 65 72.3
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.0e-12 76.3 67 67.2
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.0e-12 76.3 64 70.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.4e-12 75.9 61 73.8
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.3e-12 75.1 61 70.5
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 2.3e-12 75.1 63 65.1
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.0e-12 74.3 58 79.3
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.2e-12 73.9 71 63.4
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.2e-12 73.9 61 73.8
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 6.8e-12 73.6 74 59.5
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 2.0e-11 72.0 74 64.9
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 2.0e-11 72.0 74 64.9
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.4e-11 71.2 71 66.2
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 5.7e-11 70.5 74 56.8
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 5.7e-11 70.5 65 66.2
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.8e-11 69.7 71 60.6
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 9.8e-11 69.7 71 60.6
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.3e-10 69.3 62 62.9
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 1.7e-10 68.9 73 63.0
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 1.7e-10 68.9 67 65.7
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 2.2e-10 68.6 62 62.9
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 2.8e-10 68.2 71 62.0
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 3.7e-10 67.8 65 64.6
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 2.4e-09 65.1 76 48.7
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 2.4e-09 65.1 58 67.2
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 3.1e-09 64.7 77 48.1
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 3.1e-09 64.7 77 48.1
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.1e-09 64.7 59 71.2
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 4.1e-09 64.3 78 47.4
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 5.4e-09 63.9 41 75.6
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 9.1e-09 63.2 81 46.9
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 1.2e-08 62.8 77 48.1
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 1.6e-08 62.4 42 71.4
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 1.6e-08 62.4 42 71.4
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 2.0e-08 62.0 77 48.1
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 2.7e-08 61.6 77 46.8
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-08 61.2 42 69.0
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 3.5e-08 61.2 42 69.0
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.9e-08 60.5 60 55.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.0e-07 57.4 58 56.9
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 59.3
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.5e-06 55.8 67 49.3
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 1.5e-06 55.8 67 52.2
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.5e-06 55.8 64 53.1
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-06 55.8 58 55.2
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-06 55.8 58 55.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.9e-06 55.5 58 55.2
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.9e-06 55.5 60 53.3
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 2.5e-06 55.1 58 55.2
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.3e-06 54.7 58 58.6
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.3e-06 54.7 58 53.4
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 4.2e-06 54.3 58 53.4
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 5.5e-06 53.9 64 48.4
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 5.5e-06 53.9 65 50.8
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 5.5e-06 53.9 58 53.4
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 5.5e-06 53.9 58 53.4
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 7.2e-06 53.5 58 55.2
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.2e-06 53.5 58 56.9
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.2e-06 53.5 58 56.9
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.2e-06 53.5 57 54.4
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.2e-06 53.5 54 57.4
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 9.5e-06 53.1 54 57.4
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 9.5e-06 53.1 58 55.2
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 9.5e-06 53.1 60 56.7


User provided reference genes

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