Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 2.8e-73 278.5 136 100.0
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 2.4e-32 142.5 147 49.7
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 3.8e-30 135.2 144 47.2
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 4.9e-30 134.8 144 48.6
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 2.7e-28 129.0 144 45.8
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 6.0e-28 127.9 140 51.4
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 6.0e-28 127.9 145 44.8
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.8e-27 126.3 153 47.7
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 2.3e-27 125.9 142 45.1
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 8.7e-27 124.0 145 44.8
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.1e-26 123.6 149 46.3
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 4.3e-26 121.7 141 47.5
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 4.3e-26 121.7 145 44.8
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 4.3e-26 121.7 145 48.3
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 2.8e-25 119.0 139 47.5
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 3.7e-25 118.6 140 50.0
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 3.7e-25 118.6 111 54.1
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 6.3e-25 117.9 146 47.3
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 1.1e-24 117.1 155 47.1
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.4e-24 116.7 160 42.5
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.4e-24 116.7 146 41.8
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.8e-24 116.3 149 43.6
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 4.1e-24 115.2 148 44.6
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 9.0e-24 114.0 145 44.1
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 9.0e-24 114.0 147 44.2
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 5.9e-23 111.3 152 43.4
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 7.6e-23 110.9 145 42.8
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 1.3e-22 110.2 155 45.2
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 1.7e-22 109.8 109 48.6
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.2e-22 109.4 155 43.9
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 2.9e-22 109.0 152 44.7
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 3.8e-22 108.6 148 39.2
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 8.5e-22 107.5 146 42.5
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.5e-21 105.9 150 41.3
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 3.2e-21 105.5 145 41.4
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.2e-21 105.5 146 41.1
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 4.2e-21 105.1 158 42.4
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 5.5e-21 104.8 150 40.7
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.2e-20 103.6 150 40.0
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.1e-20 101.3 150 39.3
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 1.0e-19 100.5 143 43.4
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 1.0e-19 100.5 146 43.2
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 8.8e-19 97.4 134 43.3
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 8.8e-19 97.4 148 39.2
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 1.1e-18 97.1 149 41.6
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 4.3e-18 95.1 160 40.6
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.7e-17 93.2 149 38.3
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 2.2e-17 92.8 150 40.0
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 3.7e-17 92.0 138 42.8
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 6.3e-17 91.3 165 39.4
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 2.4e-16 89.4 151 36.4
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 1.2e-15 87.0 154 38.3
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 2.0e-15 86.3 149 37.6
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 3.4e-15 85.5 146 40.4
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.3e-14 83.6 145 36.6
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.7e-14 83.2 79 57.0
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 2.2e-14 82.8 154 39.0
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 2.2e-14 82.8 161 36.6
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.9e-14 82.4 168 35.1
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 3.8e-14 82.0 152 37.5
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 5.0e-14 81.6 142 40.1
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 5.0e-14 81.6 155 35.5
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 1.1e-13 80.5 147 36.7
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 9.4e-13 77.4 147 35.4
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 9.4e-13 77.4 136 36.8
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 1.2e-12 77.0 101 46.5
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 1.6e-12 76.6 141 35.5
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 2.7e-12 75.9 127 38.6
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.7e-12 75.9 106 40.6
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 2.7e-12 75.9 164 36.6
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 3.6e-12 75.5 146 35.6
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.7e-12 75.1 154 36.4
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 6.1e-12 74.7 113 40.7
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 3.0e-11 72.4 158 37.3
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 3.0e-11 72.4 156 35.9
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 3.9e-11 72.0 155 35.5
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 3.9e-11 72.0 162 35.2
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 5.1e-11 71.6 158 36.7
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 8.8e-11 70.9 152 34.9
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 8.8e-11 70.9 152 34.9
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 8.8e-11 70.9 152 34.9
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 8.8e-11 70.9 139 36.0
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.5e-10 70.1 153 34.6
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 2.0e-10 69.7 154 35.7
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 2.6e-10 69.3 151 36.4
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 4.4e-10 68.6 152 33.6
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 4.4e-10 68.6 152 33.6
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 5.7e-10 68.2 156 34.6
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 2.2e-09 66.2 162 31.5
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 2.8e-09 65.9 143 35.7
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 3.7e-09 65.5 172 34.9
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 1.4e-08 63.5 153 37.3
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 4.1e-08 62.0 114 34.2
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 7.0e-08 61.2 157 33.8
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 1.5e-07 60.1 164 34.1
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 1.5e-07 60.1 67 49.3
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 2.6e-07 59.3 36 69.4
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.0e-06 57.4 122 34.4
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 1.0e-06 57.4 81 35.8
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.3e-06 57.0 79 43.0
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 3.8e-06 55.5 123 33.3


User provided reference genes

Program Settings