Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu032491.1 Olea europaea HOM05D002320 ORTHO05D002428 5.9e-85 317.4 148 100.0
DCAR_025039 Daucus carota HOM05D002320 ORTHO05D002428 7.8e-21 104.4 52 90.4
Lj9A551T50 Lonicera japonica HOM05D002320 ORTHO05D002428 1.1e-19 100.5 50 88.0
arahy.Tifrunner.gnm1.ann1.GIYH3D Arachis hypogaea HOM05D002320 ORTHO05D002428 2.5e-19 99.4 68 66.2
Lalb_Chr19g0126261 Lupinus albus HOM05D002320 ORTHO05D002428 1.2e-18 97.1 51 84.3
AL1G35240 Arabidopsis lyrata HOM05D003354 ORTHO05D003786 2.0e-16 89.7 50 74.0
TPR.G28182 Trifolium pratense HOM05D002320 ORTHO05D002428 5.8e-16 88.2 59 66.1
BcaC07g38036 Brassica carinata HOM05D002320 ORTHO05D002428 9.9e-16 87.4 47 78.7
Lalb_Chr05g0220861 Lupinus albus HOM05D002320 ORTHO05D002428 3.7e-15 85.5 48 77.1
Oeu034850.1 Olea europaea HOM05D002320 ORTHO05D002428 4.9e-15 85.1 50 74.0
BcaNung00120 Brassica carinata HOM05D002095 ORTHO05D002058 6.4e-15 84.7 47 74.5
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 8.3e-15 84.3 43 86.0
Ca_14792_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 2.7e-13 79.3 50 68.0
BcaB03g15937 Brassica carinata HOM05D003354 ORTHO05D003786 1.9e-11 73.2 53 52.8
Prupe.5G052900 Prunus persica HOM05D002320 ORTHO05D002428 2.8e-10 69.3 36 83.3
unitig_0.g1334 Utricularia gibba HOM05D002320 ORTHO05D002428 6.8e-09 64.7 27 100.0
C06p51660 Brassica napus HOM05D003354 ORTHO05D003786 1.2e-08 63.9 39 56.4
GSVIVG01018327001 Vitis vinifera HOM05D002320 ORTHO05D002428 2.6e-08 62.8 26 100.0
Oeu037425.1 Olea europaea HOM05D002320 ORTHO05D002428 9.9e-08 60.8 25 100.0
Oeu037426.1 Olea europaea HOM05D002320 ORTHO05D002428 9.9e-08 60.8 25 100.0
ClCG06G008100 Citrullus lanatus HOM05D002320 ORTHO05D002428 1.3e-07 60.5 25 96.0
MELO3C020368.2 Cucumis melo HOM05D002320 ORTHO05D002428 1.3e-07 60.5 25 96.0
CsaV3_2G011090 Cucumis sativus L. HOM05D002320 ORTHO05D002428 1.3e-07 60.5 25 96.0
Sed0019875 Sechium edule HOM05D002320 ORTHO05D002428 1.3e-07 60.5 25 96.0
Aa31LG9G15160 Aethionema arabicum HOM05D002320 ORTHO05D002428 1.7e-07 60.1 51 54.9
Dinv01442 Davidia involucrata HOM05D002320 ORTHO05D002428 1.7e-07 60.1 48 52.1
ECA240G3835 Erigeron canadensis HOM05D002320 ORTHO05D002428 2.9e-07 59.3 27 88.9
Sed0021076 Sechium edule HOM05D002320 ORTHO05D002428 2.9e-07 59.3 25 96.0
Actinidia05782 Actinidia chinensis HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
MSTRG.20668 Avicennia marina HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Cfa011036 Carpinus fangiana HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
CiPaw.13G023000 Carya illinoinensis HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
CiPaw.14G017800 Carya illinoinensis HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Cc02_g25440 Coffea canephora HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
COL.COLO4_12365 Corchorus olitorius HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Haze_02889 Corylus avellana HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Dinv43597 Davidia involucrata HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Duzib133G1189 Durio zibethinus HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Duzib138G0483 Durio zibethinus HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Migut.B01501 Erythranthe guttata HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Gohir.A08G140100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Gohir.D08G161100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Gorai.004G167400 Gossypium raimondii HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Gorai.008G110800 Gossypium raimondii HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
MD07G1094800 Malus domestica HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Nitab4.5_0000563g0100 Nicotiana tabacum HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Nitab4.5_0002341g0040 Nicotiana tabacum HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Peaxi162Scf00793g00346 Petunia axillaris HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Rhsim07G0038400 Rhododendron simsii HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Sabra02G0109300 Salix brachista HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
SalBow5G1443 Salvia bowleyana HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Hund17117 Selenicereus undatus HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
Sc26g0001690 Simmondsia chinensis HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
THA.LOC104814106 Tarenaya hassleriana HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
vmacro13526 Vaccinium macrocarpon HOM05D002320 ORTHO05D002428 3.8e-07 58.9 24 100.0
DCAR_005591 Daucus carota HOM05D002320 ORTHO05D002428 4.9e-07 58.5 26 88.5
Lj7C550G3 Lonicera japonica HOM05D002320 ORTHO05D002428 4.9e-07 58.5 24 95.8
Potri.002G140000 Populus trichocarpa HOM05D002320 ORTHO05D002428 4.9e-07 58.5 24 95.8
Ciclev10019866m.g Citrus clementina HOM05D002320 ORTHO05D002428 8.4e-07 57.8 24 95.8
Gohir.A11G074400 Gossypium hirsutum HOM05D002320 ORTHO05D002428 8.4e-07 57.8 24 95.8
Gohir.D11G079100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 8.4e-07 57.8 24 95.8
Gorai.007G084700 Gossypium raimondii HOM05D002320 ORTHO05D002428 8.4e-07 57.8 24 95.8
MBI06_g44270_MAGBIO Magnolia biondii HOM05D003354 ORTHO05D003786 8.4e-07 57.8 27 77.8
Manes.01G273200 Manihot esculenta HOM05D002320 ORTHO05D002428 8.4e-07 57.8 24 95.8
Actinidia21624 Actinidia chinensis HOM05D002320 ORTHO05D002428 1.1e-06 57.4 25 88.0
Ca_07417_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 1.1e-06 57.4 24 91.7
Thhalv10028664m.g Eutrema salsugineum HOM05D002320 ORTHO05D002428 1.1e-06 57.4 24 95.8
Gohir.A12G098500 Gossypium hirsutum HOM05D002320 ORTHO05D002428 1.1e-06 57.4 24 95.8
Medtr7g451440 Medicago truncatula HOM05D002320 ORTHO05D002428 1.1e-06 57.4 24 91.7
Psat4g077360 Pisum sativum HOM05D002320 ORTHO05D002428 1.1e-06 57.4 24 95.8
SGA_v2.0_scaffold340G49341 Striga asiatica HOM05D002320 ORTHO05D002428 1.1e-06 57.4 24 95.8
TPR.G10189 Trifolium pratense HOM05D002320 ORTHO05D002428 1.1e-06 57.4 24 91.7
AL2G37860 Arabidopsis lyrata HOM05D003354 ORTHO05D003786 1.4e-06 57.0 38 52.6
EL10Ac1g00731 Beta vulgaris HOM05D002320 ORTHO05D002428 1.4e-06 57.0 24 95.8
Ca_22024_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 1.4e-06 57.0 24 91.7
Hma1.2p1_1397F.1_g280690 Hydrangea macrophylla HOM05D002320 ORTHO05D002428 1.4e-06 57.0 24 95.8
Nitab4.5_0006060g0020 Nicotiana tabacum HOM05D002320 ORTHO05D002428 1.4e-06 57.0 23 100.0
Prupe.2G119300 Prunus persica HOM05D002320 ORTHO05D002428 1.4e-06 57.0 23 100.0
QL04p026587 Quercus lobata HOM05D002320 ORTHO05D002428 1.4e-06 57.0 23 100.0
QL04p026989 Quercus lobata HOM05D002320 ORTHO05D002428 1.4e-06 57.0 23 100.0
AL6G53550 Arabidopsis lyrata HOM05D002320 ORTHO05D002428 1.9e-06 56.6 49 53.1
arahy.Tifrunner.gnm1.ann1.7MRV43 Arachis hypogaea HOM05D002320 ORTHO05D002428 1.9e-06 56.6 24 91.7
arahy.Tifrunner.gnm1.ann1.PM0Q6H Arachis hypogaea HOM05D002320 ORTHO05D002428 1.9e-06 56.6 24 91.7
AUR62013774 Chenopodium quinoa HOM05D002320 ORTHO05D002428 1.9e-06 56.6 24 91.7
AUR62023382 Chenopodium quinoa HOM05D002320 ORTHO05D002428 1.9e-06 56.6 24 91.7
COL.COLO4_06695 Corchorus olitorius HOM05D002320 ORTHO05D002428 2.4e-06 56.2 24 91.7
Gohir.D09G192000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 2.4e-06 56.2 24 91.7
Psat3g153400 Pisum sativum HOM05D002320 ORTHO05D002428 2.4e-06 56.2 24 87.5
PGR042G2252 Punica granatum HOM05D002320 ORTHO05D002428 2.4e-06 56.2 24 95.8
QL12p008422 Quercus lobata HOM05D002320 ORTHO05D002428 2.4e-06 56.2 25 88.0
SEGI_10019 Sequoiadendron giganteum HOM05D002320 ORTHO05D002428 2.4e-06 56.2 24 91.7
Solyc10g061960.2 Solanum lycopersicum HOM05D002320 ORTHO05D002428 2.4e-06 56.2 24 91.7
Sopen10g026210 Solanum pennellii HOM05D002320 ORTHO05D002428 2.4e-06 56.2 24 91.7
arahy.Tifrunner.gnm1.ann1.4U30AK Arachis hypogaea HOM05D002320 ORTHO05D002428 3.2e-06 55.8 23 95.7
arahy.Tifrunner.gnm1.ann1.5NEE7D Arachis hypogaea HOM05D002320 ORTHO05D002428 3.2e-06 55.8 23 95.7
Ciclev10026235m.g Citrus clementina HOM05D002320 ORTHO05D002428 3.2e-06 55.8 40 57.5
Duzib205G1043 Durio zibethinus HOM05D002320 ORTHO05D002428 3.2e-06 55.8 24 87.5
Thecc.01G401100 Theobroma cacao HOM05D002320 ORTHO05D002428 3.2e-06 55.8 23 95.7
BcaC08g47598 Brassica carinata HOM05D003354 ORTHO05D003786 4.2e-06 55.5 39 51.3
BolC6t40185H Brassica oleracea HOM05D003354 ORTHO05D003786 4.2e-06 55.5 39 51.3
BolC6t40188H Brassica oleracea HOM05D003354 ORTHO05D003786 4.2e-06 55.5 39 51.3
CAN.G586.2 Capsicum annuum HOM05D002320 ORTHO05D002428 4.2e-06 55.5 23 95.7
Medtr4g099180 Medicago truncatula HOM05D002320 ORTHO05D002428 4.2e-06 55.5 24 87.5
Nitab4.5_0001926g0040 Nicotiana tabacum HOM05D003354 ORTHO05D003786 4.2e-06 55.5 24 87.5
PGSC0003DMG400013126 Solanum tuberosum HOM05D002320 ORTHO05D002428 4.2e-06 55.5 23 95.7
TPR.G25754 Trifolium pratense HOM05D002320 ORTHO05D002428 5.4e-06 55.1 23 91.3
CSS0028370 Camellia sinensis var. sinensis HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 87.5
MBI04_g20752_MAGBIO Magnolia biondii HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
GSVIVG01013279001 Vitis vinifera HOM05D002320 ORTHO05D002428 7.1e-06 54.7 24 91.7
Ah.05g177700 Amaranthus hybridus HOM05D002320 ORTHO05D002428 9.2e-06 54.3 24 91.7
AUR62023641 Chenopodium quinoa HOM05D003354 ORTHO05D003786 9.2e-06 54.3 24 83.3
CsaV3_3G002180 Cucumis sativus L. HOM05D002320 ORTHO05D002428 9.2e-06 54.3 24 87.5
Glyma.17G149400 Glycine max HOM05D002320 ORTHO05D002428 9.2e-06 54.3 24 91.7
Nitab4.5_0001035g0050 Nicotiana tabacum HOM05D003354 ORTHO05D003786 9.2e-06 54.3 24 83.3
Sabra14G0037100 Salix brachista HOM05D002320 ORTHO05D002428 9.2e-06 54.3 24 91.7
Sabra14G0039200 Salix brachista HOM05D002320 ORTHO05D002428 9.2e-06 54.3 24 91.7
Thecc.03G237600 Theobroma cacao HOM05D002320 ORTHO05D002428 9.2e-06 54.3 24 83.3


User provided reference genes

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