Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 2.6e-110 402.1 210 100.0
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 1.7e-69 266.5 202 71.8
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 3.8e-61 238.8 211 66.8
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 5.4e-60 235.0 211 64.0
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 5.4e-60 235.0 211 64.0
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 7.8e-59 231.1 206 60.2
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.7e-58 229.9 205 59.0
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.9e-57 226.5 205 58.5
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 2.1e-56 223.0 205 57.6
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.8e-55 219.9 209 56.5
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 6.9e-55 218.0 225 60.4
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 7.6e-54 214.5 220 54.5
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 1.7e-50 203.4 219 55.3
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 3.0e-50 202.6 221 54.3
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 3.3e-49 199.1 216 55.6
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 3.3e-49 199.1 188 57.4
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.8e-47 193.4 197 56.9
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 3.1e-47 192.6 222 52.3
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 3.1e-47 192.6 217 52.5
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 9.0e-47 191.0 177 61.0
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 9.0e-47 191.0 215 52.1
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 9.0e-47 191.0 189 57.7
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.2e-46 190.7 135 70.4
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 4.5e-46 188.7 198 54.0
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.3e-45 187.2 203 54.7
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 1.3e-45 187.2 215 53.5
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.7e-45 186.8 229 51.5
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 4.9e-45 185.3 203 55.2
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 4.9e-45 185.3 209 53.1
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 6.4e-45 184.9 207 51.7
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 6.4e-45 184.9 188 54.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.1e-44 184.1 218 50.0
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.1e-44 184.1 189 56.6
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.4e-44 183.7 221 50.7
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.9e-44 183.3 220 51.4
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.4e-44 183.0 203 52.2
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 4.2e-44 182.2 218 51.8
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 5.4e-44 181.8 171 55.6
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 7.1e-44 181.4 215 51.2
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.2e-43 180.6 216 50.5
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.2e-43 180.6 216 50.5
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.6e-43 180.3 207 51.2
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.1e-43 179.9 192 53.6
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 3.5e-43 179.1 203 54.2
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 7.9e-43 177.9 209 51.2
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 1.3e-42 177.2 228 47.4
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.8e-42 176.8 154 62.3
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 2.3e-42 176.4 188 55.3
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 3.0e-42 176.0 154 62.3
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 3.0e-42 176.0 219 48.4
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 5.1e-42 175.3 152 59.9
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 8.7e-42 174.5 196 53.1
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 1.1e-41 174.1 203 51.7
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.5e-41 173.7 175 56.0
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 4.3e-41 172.2 167 55.7
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 4.3e-41 172.2 167 55.7
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 9.6e-41 171.0 224 48.7
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.3e-40 170.6 215 48.4
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.3e-40 170.6 191 52.9
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.1e-40 169.9 215 48.4
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.1e-40 169.9 151 58.9
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 2.1e-40 169.9 156 60.3
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.8e-40 169.5 140 62.9
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 2.8e-40 169.5 140 62.9
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 3.7e-40 169.1 215 45.1
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 3.7e-40 169.1 221 49.3
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.1e-39 167.5 208 47.1
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.4e-39 167.2 233 45.5
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.4e-39 167.2 152 61.2
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.8e-39 166.8 149 60.4
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.8e-39 166.8 187 50.3
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 3.1e-39 166.0 138 60.1
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 3.1e-39 166.0 138 63.8
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 5.3e-39 165.2 172 58.1
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 6.9e-39 164.9 209 46.9
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 9.0e-39 164.5 180 52.8
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.4e-38 162.5 201 49.3
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 5.8e-38 161.8 133 60.2
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 6.5e-37 158.3 136 58.1
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 6.5e-37 158.3 136 58.1
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 1.9e-36 156.8 131 62.6
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 5.5e-36 155.2 137 58.4
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 9.3e-36 154.5 148 53.4
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.2e-35 154.1 217 45.2
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.6e-35 153.7 155 51.6
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 2.1e-35 153.3 156 57.1
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 7.9e-35 151.4 190 45.3
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.0e-34 151.0 126 64.3
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 2.3e-34 149.8 173 45.1
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 4.3e-33 145.6 124 60.5
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 4.3e-33 145.6 145 55.9
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 5.7e-33 145.2 180 48.9
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 7.4e-33 144.8 115 60.0
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.6e-32 143.7 101 71.3
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.8e-32 142.9 138 52.2
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 4.8e-32 142.1 126 52.4
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 5.8e-30 135.2 197 46.7
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 5.0e-29 132.1 135 47.4
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 7.4e-25 118.2 179 46.9
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 3.1e-23 112.8 215 40.9
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 4.5e-22 109.0 143 46.2
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.0e-21 107.8 147 44.9
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 3.0e-18 96.3 139 46.0
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 3.0e-18 96.3 199 38.2
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.7e-16 90.5 115 40.0
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 8.2e-16 88.2 114 46.5
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 1.1e-15 87.8 73 58.9
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 4.5e-14 82.4 109 40.4
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 3.9e-10 69.3 127 33.9
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 2.2e-08 63.5 56 55.4
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.4e-07 60.8 132 28.8
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 4.1e-07 59.3 142 31.7
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 2.6e-06 56.6 145 32.4
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 4.5e-06 55.8 153 28.8


User provided reference genes

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