Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu032023.1 Olea europaea HOM05D005080 ORTHO05D002680 1.1e-66 256.5 133 100.0
Oeu019968.1 Olea europaea HOM05D005080 ORTHO05D002680 7.2e-58 227.3 133 88.0
MSTRG.3863 Avicennia marina HOM05D005080 ORTHO05D002680 2.0e-44 182.6 123 77.2
Migut.G00046 Erythranthe guttata HOM05D005080 ORTHO05D002680 8.5e-43 177.2 117 79.5
SGA_v2.0_scaffold18G08397 Striga asiatica HOM05D005080 ORTHO05D002680 1.6e-41 172.9 134 70.1
QL06p011711 Quercus lobata HOM05D005080 ORTHO05D002680 1.1e-39 166.8 131 69.5
AUR62016127 Chenopodium quinoa HOM05D005080 ORTHO05D002680 4.1e-37 158.3 133 66.2
EL10Ac3g05465 Beta vulgaris HOM05D005080 ORTHO05D002680 7.0e-37 157.5 133 65.4
Hund11962 Selenicereus undatus HOM05D005080 ORTHO05D002680 2.0e-36 156.0 130 63.1
MBI19_g07241_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 2.6e-36 155.6 134 64.2
SalBow6G6408 Salvia bowleyana HOM05D005080 ORTHO05D002680 3.5e-36 155.2 158 53.8
GSVIVG01031233001 Vitis vinifera HOM05D005080 ORTHO05D002680 4.5e-36 154.8 147 61.9
TAR362G1134 Trochodendron aralioides HOM05D005080 ORTHO05D002680 1.0e-35 153.7 129 68.2
CSS0006739 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 1.7e-35 152.9 143 62.9
MBI19_g09323_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 1.7e-35 152.9 135 63.7
CSS0004193 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 2.2e-35 152.5 143 62.9
Manes.08G111700 Manihot esculenta HOM05D005080 ORTHO05D002680 2.9e-35 152.1 134 64.2
Duzib177G0226 Durio zibethinus HOM05D005080 ORTHO05D002680 8.5e-35 150.6 138 63.0
vmacro01559 Vaccinium macrocarpon HOM05D005080 ORTHO05D002680 1.1e-34 150.2 146 59.6
Aqoxy2G02773 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 1.5e-34 149.8 116 70.7
CiPaw.07G029300 Carya illinoinensis HOM05D005080 ORTHO05D002680 3.2e-34 148.7 138 61.6
Dinv24438 Davidia involucrata HOM05D005080 ORTHO05D002680 3.2e-34 148.7 144 61.1
Sc25g0003340 Simmondsia chinensis HOM05D005080 ORTHO05D002680 9.4e-34 147.1 140 59.3
Cc02_g34980 Coffea canephora HOM05D005080 ORTHO05D002680 1.6e-33 146.4 142 60.6
Rhsim11G0094800 Rhododendron simsii HOM05D005080 ORTHO05D002680 1.6e-33 146.4 147 59.2
Medtr1g084000 Medicago truncatula HOM05D005080 ORTHO05D002680 3.6e-33 145.2 132 62.1
Glyma.10G147400 Glycine max HOM05D005080 ORTHO05D002680 8.0e-33 144.1 134 61.2
TWI56G0821 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 8.0e-33 144.1 135 60.7
Ca_10168_v3 Cicer arietinum L. HOM05D005080 ORTHO05D002680 1.4e-32 143.3 138 59.4
ClCG02G014980 Citrullus lanatus HOM05D005080 ORTHO05D002680 1.4e-32 143.3 137 59.1
QL03p040025 Quercus lobata HOM05D005080 ORTHO05D002680 1.4e-32 143.3 139 60.4
Lalb_Chr02g0147831 Lupinus albus HOM05D005080 ORTHO05D002680 2.3e-32 142.5 130 63.8
QL03p013481 Quercus lobata HOM05D005080 ORTHO05D002680 2.3e-32 142.5 140 59.3
CANSAT80G1801 Cannabis sativa HOM05D005080 ORTHO05D002680 4.0e-32 141.7 130 60.8
Cpa.g.sc48.156 Carica papaya HOM05D005080 ORTHO05D002680 4.0e-32 141.7 130 63.8
Actinidia35525 Actinidia chinensis HOM05D005080 ORTHO05D002680 6.8e-32 141.0 136 63.2
COL.COLO4_04158 Corchorus olitorius HOM05D005080 ORTHO05D002680 6.8e-32 141.0 139 60.4
Haze_04068 Corylus avellana HOM05D005080 ORTHO05D002680 6.8e-32 141.0 139 61.2
THA.LOC104816888 Tarenaya hassleriana HOM05D005080 ORTHO05D002680 6.8e-32 141.0 126 65.1
TPR.G25211 Trifolium pratense HOM05D005080 ORTHO05D002680 6.8e-32 141.0 138 57.2
Thecc.05G322200 Theobroma cacao HOM05D005080 ORTHO05D002680 8.8e-32 140.6 138 59.4
Hma1.2p1_0008F-1.1_g005640 Hydrangea macrophylla HOM05D005080 ORTHO05D002680 1.2e-31 140.2 147 55.8
Dinv30882 Davidia involucrata HOM05D005080 ORTHO05D002680 1.5e-31 139.8 137 62.0
Sp2g06450 Schrenkiella parvula HOM05D005080 ORTHO05D002680 1.5e-31 139.8 139 59.7
Potri.013G009100 Populus trichocarpa HOM05D005080 ORTHO05D002680 2.0e-31 139.4 88 78.4
Cfa006699 Carpinus fangiana HOM05D005080 ORTHO05D002680 2.6e-31 139.0 139 61.2
Ciclev10002575m.g Citrus clementina HOM05D005080 ORTHO05D002680 2.6e-31 139.0 141 57.4
arahy.Tifrunner.gnm1.ann1.6BZ3LL Arachis hypogaea HOM05D005080 ORTHO05D002680 3.4e-31 138.7 132 59.8
MELO3C004191.2 Cucumis melo HOM05D005080 ORTHO05D002680 3.4e-31 138.7 137 56.9
Phvul.007G201000 Phaseolus vulgaris HOM05D005080 ORTHO05D002680 4.4e-31 138.3 136 59.6
CsaV3_2G007020 Cucumis sativus L. HOM05D005080 ORTHO05D002680 5.7e-31 137.9 137 56.2
Eucgr.H03287 Eucalyptus grandis HOM05D005080 ORTHO05D002680 5.7e-31 137.9 119 64.7
Aqoxy2G03866 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 7.5e-31 137.5 130 61.5
arahy.Tifrunner.gnm1.ann1.DD48CX Arachis hypogaea HOM05D005080 ORTHO05D002680 7.5e-31 137.5 132 59.8
HanXRQChr10g0294491 Helianthus annuus HOM05D005080 ORTHO05D002680 7.5e-31 137.5 88 80.7
Psat6g152200 Pisum sativum HOM05D005080 ORTHO05D002680 7.5e-31 137.5 139 57.6
Nitab4.5_0000155g0030 Nicotiana tabacum HOM05D005080 ORTHO05D002680 9.7e-31 137.1 148 55.4
TPR.G34915 Trifolium pratense HOM05D005080 ORTHO05D002680 9.7e-31 137.1 138 56.5
VMungo0720G3125 Vigna mungo HOM05D005080 ORTHO05D002680 9.7e-31 137.1 136 58.8
ECA234G0011 Erigeron canadensis HOM05D005080 ORTHO05D002680 1.3e-30 136.7 109 69.7
Lj5g0010805 Lotus japonicus HOM05D005080 ORTHO05D002680 1.3e-30 136.7 134 59.7
Glyma.20G098100 Glycine max HOM05D005080 ORTHO05D002680 2.2e-30 136.0 136 58.1
Lsat_1_v5_gn_5_103961 Lactuca sativa HOM05D005080 ORTHO05D002680 2.2e-30 136.0 113 65.5
CDE05G2119 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 8.3e-30 134.0 147 51.7
Duzib106G0715 Durio zibethinus HOM05D005080 ORTHO05D002680 8.3e-30 134.0 132 59.1
AT1G56420 Arabidopsis thaliana HOM05D005080 ORTHO05D002680 1.1e-29 133.7 118 63.6
BcaC09g49559 Brassica carinata HOM05D005080 ORTHO05D002680 1.1e-29 133.7 115 60.9
A01p27440 Brassica napus HOM05D005080 ORTHO05D002680 1.1e-29 133.7 115 60.9
C01p35300 Brassica napus HOM05D005080 ORTHO05D002680 1.1e-29 133.7 115 60.9
BolC1t03487H Brassica oleracea HOM05D005080 ORTHO05D002680 1.1e-29 133.7 115 60.9
BraA01t02883Z Brassica rapa HOM05D005080 ORTHO05D002680 1.1e-29 133.7 115 60.9
Nitab4.5_0003894g0020 Nicotiana tabacum HOM05D005080 ORTHO05D002680 1.1e-29 133.7 113 63.7
Prupe.6G313500 Prunus persica HOM05D005080 ORTHO05D002680 1.4e-29 133.3 76 85.5
Peaxi162Scf01208g00140 Petunia axillaris HOM05D005080 ORTHO05D002680 2.4e-29 132.5 105 69.5
FvH4_6g07400 Fragaria vesca HOM05D005080 ORTHO05D002680 3.1e-29 132.1 76 82.9
FAN02G4361 Fragaria x ananassa HOM05D005080 ORTHO05D002680 3.1e-29 132.1 76 82.9
FAN14G1760 Fragaria x ananassa HOM05D005080 ORTHO05D002680 3.1e-29 132.1 76 82.9
RcHm_v2.0_Chr3g0457001 Rosa chinensis HOM05D005080 ORTHO05D002680 3.1e-29 132.1 76 82.9
AL1G66100 Arabidopsis lyrata HOM05D005080 ORTHO05D002680 4.1e-29 131.7 120 60.8
CAN.G625.12 Capsicum annuum HOM05D005080 ORTHO05D002680 4.1e-29 131.7 118 61.0
Gohir.A11G273000 Gossypium hirsutum HOM05D005080 ORTHO05D002680 4.1e-29 131.7 75 86.7
MD04G1193400 Malus domestica HOM05D005080 ORTHO05D002680 4.1e-29 131.7 76 85.5
TWI36G1328 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 5.3e-29 131.3 107 65.4
CARHR055230 Cardamine hirsuta HOM05D005080 ORTHO05D002680 7.0e-29 131.0 121 62.0
Aa31LG1G5960 Aethionema arabicum HOM05D005080 ORTHO05D002680 9.1e-29 130.6 130 60.8
FAN05G0620 Fragaria x ananassa HOM05D005080 ORTHO05D002680 9.1e-29 130.6 80 78.8
Gohir.A11G272900 Gossypium hirsutum HOM05D005080 ORTHO05D002680 9.1e-29 130.6 143 54.5
HPP92_019389 Vanilla planifolia HOM05D005080 ORTHO05D002680 9.1e-29 130.6 117 61.5
Carub.0002s0773 Capsella rubella HOM05D005080 ORTHO05D002680 1.2e-28 130.2 121 62.0
Gorai.007G306000 Gossypium raimondii HOM05D005080 ORTHO05D002680 1.2e-28 130.2 143 55.2
BcaB04g20161 Brassica carinata HOM05D005080 ORTHO05D002680 1.6e-28 129.8 111 64.0
CDE11G1091 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 1.6e-28 129.8 152 53.3
FAN09G1903 Fragaria x ananassa HOM05D005080 ORTHO05D002680 1.6e-28 129.8 75 82.7
Lalb_Chr06g0167471 Lupinus albus HOM05D005080 ORTHO05D002680 2.0e-28 129.4 132 58.3
unitig_0.g2584 Utricularia gibba HOM05D005080 ORTHO05D002680 2.0e-28 129.4 87 77.0
Duzib128G1506 Durio zibethinus HOM05D005080 ORTHO05D002680 2.7e-28 129.0 117 62.4
Gohir.D11G283200 Gossypium hirsutum HOM05D005080 ORTHO05D002680 2.7e-28 129.0 143 54.5
Zm00001eb137010 Zea mays HOM05D005080 ORTHO05D002680 3.5e-28 128.6 133 56.4
Gorai.007G305900 Gossypium raimondii HOM05D005080 ORTHO05D002680 4.5e-28 128.3 143 54.5
PSO170G3135 Papaver somniferum HOM05D005080 ORTHO05D002680 4.5e-28 128.3 89 73.0
PGSC0003DMG400012652 Solanum tuberosum HOM05D005080 ORTHO05D002680 5.9e-28 127.9 132 58.3
Thhalv10023712m.g Eutrema salsugineum HOM05D005080 ORTHO05D002680 7.7e-28 127.5 133 57.9
Sed0010078 Sechium edule HOM05D005080 ORTHO05D002680 1.0e-27 127.1 137 56.2
Gohir.D11G283100 Gossypium hirsutum HOM05D005080 ORTHO05D002680 1.3e-27 126.7 143 53.8
SalBow8G3275 Salvia bowleyana HOM05D005080 ORTHO05D002680 3.8e-27 125.2 112 60.7
Sabra13G0007700 Salix brachista HOM05D005080 ORTHO05D002680 5.0e-27 124.8 112 60.7
PSO357G0168 Papaver somniferum HOM05D005080 ORTHO05D002680 6.5e-27 124.4 76 77.6
Solyc02g085920.3 Solanum lycopersicum HOM05D005080 ORTHO05D002680 6.5e-27 124.4 99 66.7
PGR083G2900 Punica granatum HOM05D005080 ORTHO05D002680 1.9e-26 122.9 145 51.0
ATR0706G213 Amborella trichopoda HOM05D005080 ORTHO05D002680 1.6e-25 119.8 120 58.3
DCAR_025280 Daucus carota HOM05D005080 ORTHO05D002680 1.0e-24 117.1 92 69.6
PSO210G1547 Papaver somniferum HOM05D005080 ORTHO05D002680 4.0e-24 115.2 113 62.8
PSO761G0685 Papaver somniferum HOM05D005080 ORTHO05D002680 4.0e-24 115.2 113 62.8
Os12g0560600 Oryza sativa ssp. japonica HOM05D005080 ORTHO05D002680 5.2e-24 114.8 120 54.2
Lju926A9G32 Lonicera japonica HOM05D005080 ORTHO05D002680 2.6e-23 112.5 61 91.8
AUR62041400 Chenopodium quinoa HOM05D005080 ORTHO05D002680 3.7e-22 108.6 102 59.8
QL06p011739 Quercus lobata HOM05D005080 ORTHO05D002680 1.1e-21 107.1 101 59.4
SEGI_39060 Sequoiadendron giganteum HOM05D005080 ORTHO05D002680 1.6e-20 103.2 112 51.8
AagrBONN_evm.TU.Sc2ySwM_368.3291 Anthoceros agrestis HOM05D005080 ORTHO05D002680 4.7e-17 91.7 72 58.3
Ah.04g154650 Amaranthus hybridus HOM05D005080 ORTHO05D002680 4.0e-16 88.6 77 61.0
Pp3c5_5210 Physcomitrium patens HOM05D005080 ORTHO05D002680 5.2e-16 88.2 70 58.6
SMO146G0256 Selaginella moellendorffii HOM05D005080 ORTHO05D002680 2.6e-15 85.9 67 58.2
CSS0044415 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 4.9e-14 81.6 90 55.6
QL03p014030 Quercus lobata HOM05D005080 ORTHO05D002680 4.9e-14 81.6 107 47.7
Peaxi162Scf00484g00214 Petunia axillaris HOM05D005080 ORTHO05D002680 3.2e-13 79.0 75 60.0
RcHm_v2.0_Chr5g0001621 Rosa chinensis HOM05D005080 ORTHO05D002680 3.2e-13 79.0 79 53.2
Sopen02g030590 Solanum pennellii HOM05D005080 ORTHO05D002680 1.7e-11 73.2 69 58.0
Mapoly0002s0008 Marchantia polymorpha HOM05D005080 ORTHO05D002680 8.0e-09 64.3 67 44.8
ATR0661G558 Amborella trichopoda HOM05D006448 ORTHO05D002680 4.0e-08 62.0 65 46.2
Atru.chr5.2961 Acer truncatum HOM05D005080 ORTHO05D002680 5.2e-08 61.6 34 85.3
DCAR_000888 Daucus carota HOM05D006448 ORTHO05D002680 1.5e-07 60.1 69 44.9
Actinidia05239 Actinidia chinensis HOM05D006448 ORTHO05D002680 4.4e-07 58.5 113 35.4
MSTRG.13803 Avicennia marina HOM05D006448 ORTHO05D002680 5.8e-07 58.2 67 43.3
SalBow8G1371 Salvia bowleyana HOM05D005080 ORTHO05D002680 5.8e-07 58.2 30 93.3
CSS0032564 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 7.5e-07 57.8 30 93.3
TAR365G0655 Trochodendron aralioides HOM05D005080 ORTHO05D002680 7.5e-07 57.8 30 93.3
COL.COLO4_23809 Corchorus olitorius HOM05D006448 ORTHO05D002680 9.8e-07 57.4 62 43.5
Cc08_g13670 Coffea canephora HOM05D006448 ORTHO05D002680 1.3e-06 57.0 66 45.5
Thecc.03G266800 Theobroma cacao HOM05D006448 ORTHO05D002680 1.3e-06 57.0 65 43.1
Ah.04g154660 Amaranthus hybridus HOM05D005080 ORTHO05D002680 1.7e-06 56.6 29 93.1
Gohir.A12G223300 Gossypium hirsutum HOM05D006448 ORTHO05D002680 1.7e-06 56.6 66 42.4
SGA_v2.0_scaffold144G35983 Striga asiatica HOM05D006448 ORTHO05D002680 1.7e-06 56.6 122 32.0
A09p63810 Brassica napus HOM05D006448 ORTHO05D002680 2.2e-06 56.2 109 35.8
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 2.2e-06 56.2 109 35.8
Hma1.2p1_0371F.1_g138330 Hydrangea macrophylla HOM05D006448 ORTHO05D002680 2.2e-06 56.2 66 42.4
C02p30770 Brassica napus HOM05D004697 ORTHO05D006015 4.9e-06 55.1 30 86.7
BolC3t14325H Brassica oleracea HOM05D004697 ORTHO05D002680 4.9e-06 55.1 30 86.7
MBI18_g35139_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 4.9e-06 55.1 33 81.8
TWI81G0076 Tripterygium wilfordii HOM05D006448 ORTHO05D002680 4.9e-06 55.1 70 40.0
Duzib205G1269 Durio zibethinus HOM05D006448 ORTHO05D002680 6.4e-06 54.7 66 40.9
BolC4t24474H Brassica oleracea HOM05D006448 ORTHO05D002680 8.3e-06 54.3 95 36.8
Gohir.D12G225900 Gossypium hirsutum HOM05D006448 ORTHO05D002680 8.3e-06 54.3 66 40.9
Gorai.008G241900 Gossypium raimondii HOM05D006448 ORTHO05D002680 8.3e-06 54.3 66 40.9
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 8.3e-06 54.3 29 89.7


User provided reference genes

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