Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 6.1e-124 447.6 241 100.0
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 8.3e-105 384.0 241 84.2
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 7.8e-103 377.5 241 84.2
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 2.3e-102 375.9 241 83.8
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 3.9e-102 375.2 241 81.7
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 5.6e-101 371.3 241 83.0
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 3.6e-100 368.6 241 82.2
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 6.2e-100 367.9 241 80.5
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 8.0e-100 367.5 241 80.5
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 1.4e-99 366.7 241 80.9
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.8e-99 366.3 242 81.8
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 3.1e-99 365.5 241 80.5
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.2e-99 364.8 242 81.4
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 5.2e-99 364.8 241 79.7
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 8.9e-99 364.0 241 80.5
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 1.2e-98 363.6 241 80.1
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 2.6e-98 362.5 241 79.7
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 2.6e-98 362.5 241 80.1
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 2.6e-98 362.5 241 78.8
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 2.6e-98 362.5 241 78.8
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 4.4e-98 361.7 239 79.9
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 9.8e-98 360.5 241 80.9
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 1.7e-97 359.8 241 80.1
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.7e-97 359.8 241 80.1
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 3.7e-97 358.6 241 78.0
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 3.7e-97 358.6 241 78.0
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 3.7e-97 358.6 241 80.1
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 4.9e-97 358.2 241 79.7
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 6.4e-97 357.8 241 78.4
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 8.3e-97 357.5 241 78.8
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 8.3e-97 357.5 241 78.0
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 1.4e-96 356.7 241 79.7
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 1.4e-96 356.7 241 79.3
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 3.2e-96 355.5 241 77.6
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 4.1e-96 355.1 241 78.4
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 5.4e-96 354.8 241 79.7
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 5.4e-96 354.8 239 79.9
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 7.0e-96 354.4 241 77.6
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 9.2e-96 354.0 241 79.3
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 1.2e-95 353.6 241 77.6
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 1.2e-95 353.6 241 78.8
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 1.2e-95 353.6 241 78.0
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 2.0e-95 352.8 237 78.9
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 2.0e-95 352.8 241 78.8
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 2.7e-95 352.4 241 78.4
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 3.5e-95 352.1 241 78.4
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 3.5e-95 352.1 241 78.0
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.0e-95 351.3 237 78.1
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 7.8e-95 350.9 241 77.6
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 1.0e-94 350.5 241 75.1
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 1.3e-94 350.1 241 75.9
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 1.3e-94 350.1 241 76.8
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 3.0e-94 349.0 241 78.0
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 6.6e-94 347.8 241 78.0
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 6.6e-94 347.8 241 77.6
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 1.1e-93 347.1 258 74.0
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 1.5e-93 346.7 241 77.2
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 2.5e-93 345.9 241 76.3
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 4.3e-93 345.1 241 76.8
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 1.2e-92 343.6 241 75.5
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 1.6e-92 343.2 241 75.9
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.1e-92 342.8 241 75.9
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 2.1e-92 342.8 241 75.5
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 3.6e-92 342.0 241 76.8
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 6.2e-92 341.3 241 75.1
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 1.1e-91 340.5 241 72.2
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 2.3e-91 339.3 241 74.7
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 4.0e-91 338.6 238 75.2
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 5.2e-91 338.2 239 73.6
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 6.8e-91 337.8 241 76.3
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 1.2e-90 337.0 241 75.1
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 1.5e-90 336.7 277 67.9
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 3.4e-90 335.5 241 72.6
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 5.8e-90 334.7 241 75.1
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 5.8e-90 334.7 241 74.7
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 9.8e-90 334.0 228 79.8
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 1.3e-89 333.6 237 73.4
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 1.7e-89 333.2 241 75.1
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 3.7e-89 332.0 241 73.9
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 8.3e-89 330.9 241 73.4
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 7.1e-88 327.8 239 71.5
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 1.6e-87 326.6 239 71.5
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 1.6e-87 326.6 239 71.1
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 2.7e-87 325.9 239 70.7
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 2.7e-87 325.9 239 70.7
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 3.5e-87 325.5 239 71.5
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 3.5e-87 325.5 239 70.7
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 3.5e-87 325.5 239 70.7
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 3.5e-87 325.5 239 70.7
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 6.0e-87 324.7 239 70.7
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 7.8e-87 324.3 239 70.7
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.0e-86 323.9 217 79.7
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 1.0e-86 323.9 239 71.1
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.7e-86 323.2 224 76.8
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 2.3e-86 322.8 240 70.8
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 1.1e-85 320.5 239 70.3
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 3.3e-85 318.9 242 73.6
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 5.6e-85 318.2 241 71.4
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 5.6e-85 318.2 241 69.3
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 2.8e-84 315.8 241 71.4
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.6e-84 315.5 239 72.4
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 3.6e-84 315.5 211 78.2
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 5.2e-83 311.6 216 76.9
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.8e-83 311.2 217 75.6
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 2.0e-82 309.7 216 76.4
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 1.9e-80 303.1 247 70.0
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 1.9e-80 303.1 183 87.4
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 2.4e-80 302.8 239 69.5
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 2.7e-79 299.3 241 69.3
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 7.8e-79 297.7 239 70.7
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 6.6e-78 294.7 231 71.0
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 8.6e-78 294.3 241 69.3
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 8.9e-75 284.3 238 64.7
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.6e-74 282.7 206 74.3
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 3.8e-73 278.9 224 67.9
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 5.4e-72 275.0 169 86.4
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 5.4e-72 275.0 164 89.0
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 1.7e-70 270.0 240 63.8
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 1.5e-69 266.9 213 68.1
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 1.5e-69 266.9 240 62.9
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 5.3e-67 258.5 162 85.8
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 9.0e-67 257.7 241 61.8
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 7.6e-66 254.6 166 83.1
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 6.4e-65 251.5 218 64.7
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 9.6e-61 237.7 234 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 1.3e-60 237.3 213 63.4
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 9.0e-59 231.1 183 68.9
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 9.0e-59 231.1 183 68.9
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.2e-58 230.7 218 61.5
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 2.1e-52 209.9 183 63.4
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 6.9e-51 204.9 205 58.5
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 1.2e-50 204.1 165 67.9
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 3.4e-50 202.6 215 57.2
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 1.7e-49 200.3 198 61.1
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 2.9e-49 199.5 117 90.6
FAN13G0008 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.9e-45 186.8 117 85.5
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 7.4e-45 184.9 113 87.6
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 1.1e-43 181.0 153 64.7
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 1.8e-43 180.3 117 81.2
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 1.0e-41 174.5 187 58.3
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 1.7e-41 173.7 122 74.6
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 5.5e-40 168.7 148 66.9
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 3.9e-38 162.5 191 52.4
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 8.7e-38 161.4 134 66.4
Cc00_g05440 Coffea canephora HOM05D003462 ORTHO05D003946 2.5e-37 159.8 213 50.2
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 1.8e-35 153.7 112 74.1
FAN18G1391 Fragaria x ananassa HOM05D003462 ORTHO05D003946 3.1e-35 152.9 148 62.8
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 3.4e-34 149.4 159 57.9
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 1.0e-33 147.9 86 89.5
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 3.8e-33 146.0 188 50.0
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 3.8e-33 146.0 104 75.0
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 1.4e-30 137.5 87 81.6
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 2.3e-30 136.7 87 80.5
HanXRQChr09g0240321 Helianthus annuus HOM05D003462 ORTHO05D003946 1.5e-29 134.0 102 68.6
HanXRQChr09g0240811 Helianthus annuus HOM05D003462 ORTHO05D003946 9.7e-29 131.3 102 67.6
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 1.8e-27 127.1 120 60.0
RcHm_v2.0_Chr6g0264331 Rosa chinensis HOM05D003462 ORTHO05D003946 4.1e-27 125.9 74 89.2
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 9.1e-27 124.8 203 38.9
ECA236G4192 Erigeron canadensis HOM05D003462 ORTHO05D003946 3.4e-26 122.9 78 78.2
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 1.7e-25 120.6 127 53.5
Cre06.g267700 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 3.8e-25 119.4 185 43.8
Medtr4g133130 Medicago truncatula HOM05D000348 ORTHO05D003946 5.5e-24 115.5 166 47.6
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 5.5e-24 115.5 203 39.4
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 5.5e-24 115.5 174 45.4
CBR_g31190 Chara braunii HOM05D003462 ORTHO05D003946 3.7e-20 102.8 69 73.9
RcHm_v2.0_Chr3g0495421 Rosa chinensis HOM05D003462 ORTHO05D003946 3.7e-20 102.8 116 54.3
Ca_29357_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 5.9e-18 95.5 151 38.4
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 1.0e-17 94.7 55 92.7
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 4.2e-16 89.4 145 45.5
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 5.5e-16 89.0 53 86.8
ECA233G4583 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.6e-15 87.4 160 42.5
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 1.6e-15 87.4 180 36.7
FvH4_5g13112 Fragaria vesca HOM05D003462 ORTHO05D003946 2.7e-15 86.7 66 68.2
ATR0559G066 Amborella trichopoda HOM05D003462 ORTHO05D003946 4.7e-15 85.9 83 54.2
COL.COLO4_01124 Corchorus olitorius HOM05D003462 ORTHO05D003946 4.0e-14 82.8 156 36.5
Medtr4g130550 Medicago truncatula HOM05D003462 ORTHO05D003946 1.8e-11 73.9 140 35.0
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 1.8e-11 73.9 67 58.2
ECA233G4504 Erigeron canadensis HOM05D003462 ORTHO05D003946 4.5e-10 69.3 51 68.6
Cre06.g251550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 1.0e-09 68.2 189 33.9
PRCOL_00001689 Prasinoderma coloniale HOM05D003462 ORTHO05D003946 4.2e-08 62.8 193 30.6


User provided reference genes

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