Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu031547.2 Olea europaea HOM05D002558 ORTHO05D002768 1.3e-31 139.4 91 100.0
Ciclev10009557m.g Citrus clementina HOM05D002558 ORTHO05D002768 1.3e-21 106.3 91 60.4
TWI63G0866 Tripterygium wilfordii HOM05D002558 ORTHO05D002768 1.3e-21 106.3 91 64.8
GSVIVG01035629001 Vitis vinifera HOM05D002558 ORTHO05D002768 1.3e-21 106.3 91 59.3
Migut.A00207 Erythranthe guttata HOM05D002558 ORTHO05D002768 4.8e-21 104.4 92 64.1
Gohir.D08G271500 Gossypium hirsutum HOM05D002558 ORTHO05D002768 4.8e-21 104.4 92 62.0
Actinidia15737 Actinidia chinensis HOM05D002558 ORTHO05D002768 1.1e-20 103.2 93 66.7
Gorai.004G289900 Gossypium raimondii HOM05D002558 ORTHO05D002768 1.4e-20 102.8 92 60.9
Thecc.09G044700 Theobroma cacao HOM05D002558 ORTHO05D002768 1.4e-20 102.8 92 62.0
FAN15G3002 Fragaria x ananassa HOM05D002558 ORTHO05D002768 1.8e-20 102.4 103 55.3
FAN27G0094 Fragaria x ananassa HOM05D002558 ORTHO05D002768 1.8e-20 102.4 98 62.2
FAN20G1950 Fragaria x ananassa HOM05D002558 ORTHO05D002768 2.4e-20 102.1 103 66.0
Oeu012198.1 Olea europaea HOM05D002558 ORTHO05D002768 2.4e-20 102.1 86 67.4
Gohir.A08G249984 Gossypium hirsutum HOM05D002558 ORTHO05D002768 3.1e-20 101.7 92 60.9
TWI34G1326 Tripterygium wilfordii HOM05D002558 ORTHO05D002768 3.1e-20 101.7 91 62.6
CiPaw.07G204600 Carya illinoinensis HOM05D002558 ORTHO05D002768 4.1e-20 101.3 91 58.2
MD15G1093900 Malus domestica HOM05D002558 ORTHO05D002768 5.3e-20 100.9 91 58.2
Duzib168G1844 Durio zibethinus HOM05D002558 ORTHO05D002768 6.9e-20 100.5 91 61.5
PGSC0003DMG400018583 Solanum tuberosum HOM05D002558 ORTHO05D002768 9.0e-20 100.1 92 62.0
arahy.Tifrunner.gnm1.ann1.KPU76V Arachis hypogaea HOM05D002558 ORTHO05D002768 1.2e-19 99.8 91 67.0
Glyma.17G194200 Glycine max HOM05D002558 ORTHO05D002768 1.2e-19 99.8 91 62.6
Glyma.14G146200 Glycine max HOM05D002558 ORTHO05D002768 1.5e-19 99.4 91 62.6
ECA246G0608 Erigeron canadensis HOM05D005233 ORTHO05D006308 2.0e-19 99.0 101 57.4
arahy.Tifrunner.gnm1.ann1.9C8SD4 Arachis hypogaea HOM05D002558 ORTHO05D002768 2.6e-19 98.6 91 67.0
Glyma.06G085600 Glycine max HOM05D002558 ORTHO05D002768 2.6e-19 98.6 89 59.6
Psat6g037800 Pisum sativum HOM05D002558 ORTHO05D002768 2.6e-19 98.6 92 60.9
Phvul.002G267100 Phaseolus vulgaris HOM05D002558 ORTHO05D002768 4.5e-19 97.8 91 60.4
Sabra18G0043900 Salix brachista HOM05D002558 ORTHO05D002768 4.5e-19 97.8 91 60.4
TPR.G24532 Trifolium pratense HOM05D002558 ORTHO05D002768 4.5e-19 97.8 90 62.2
TAR626G0604 Trochodendron aralioides HOM05D002558 ORTHO05D002768 4.5e-19 97.8 90 56.7
Lalb_Chr08g0243091 Lupinus albus HOM05D002558 ORTHO05D002768 7.6e-19 97.1 90 58.9
Sc09g0009270 Simmondsia chinensis HOM05D002558 ORTHO05D002768 1.0e-18 96.7 89 60.7
Solyc11g071220.2 Solanum lycopersicum HOM05D002558 ORTHO05D002768 1.3e-18 96.3 93 60.2
Sopen11g028900 Solanum pennellii HOM05D002558 ORTHO05D002768 1.3e-18 96.3 93 60.2
Ah.10g035040 Amaranthus hybridus HOM05D002558 ORTHO05D002768 1.7e-18 95.9 91 58.2
AUR62009287 Chenopodium quinoa HOM05D002558 ORTHO05D002768 2.2e-18 95.5 91 59.3
SalBow4G0694 Salvia bowleyana HOM05D002558 ORTHO05D002768 2.2e-18 95.5 91 72.5
Cfa013362 Carpinus fangiana HOM05D002558 ORTHO05D002768 5.0e-18 94.4 91 57.1
AUR62039693 Chenopodium quinoa HOM05D002558 ORTHO05D002768 5.0e-18 94.4 91 58.2
Prupe.1G448700 Prunus persica HOM05D002558 ORTHO05D002768 5.0e-18 94.4 106 58.5
Potri.006G238800 Populus trichocarpa HOM05D002558 ORTHO05D002768 6.5e-18 94.0 91 57.1
ClCG08G012260 Citrullus lanatus HOM05D002558 ORTHO05D002768 1.4e-17 92.8 89 55.1
Gorai.010G107100 Gossypium raimondii HOM05D002558 ORTHO05D002768 1.9e-17 92.4 97 56.7
Hund19519 Selenicereus undatus HOM05D002558 ORTHO05D002768 1.9e-17 92.4 91 59.3
Gohir.A06G093000 Gossypium hirsutum HOM05D002558 ORTHO05D002768 3.2e-17 91.7 93 57.0
Lj7C702T4 Lonicera japonica HOM05D002558 ORTHO05D002768 3.2e-17 91.7 87 75.9
SGA_v2.0_scaffold103G29960 Striga asiatica HOM05D002558 ORTHO05D002768 3.2e-17 91.7 90 62.2
Gohir.D06G092700 Gossypium hirsutum HOM05D002558 ORTHO05D002768 5.5e-17 90.9 96 55.2
RcHm_v2.0_Chr6g0306181 Rosa chinensis HOM05D002558 ORTHO05D002768 5.5e-17 90.9 103 50.5
Sabra06G0186800 Salix brachista HOM05D002558 ORTHO05D002768 7.2e-17 90.5 89 56.2
CsaV3_2G030890 Cucumis sativus L. HOM05D002558 ORTHO05D002768 9.3e-17 90.1 89 55.1
VMungo1309G0315 Vigna mungo HOM05D000191 ORTHO05D000122 9.3e-17 90.1 89 56.2
Phvul.009G109500 Phaseolus vulgaris HOM05D002558 ORTHO05D002768 1.2e-16 89.7 89 69.7
FvH4_2g35630 Fragaria vesca HOM05D002558 ORTHO05D002768 2.1e-16 89.0 108 48.1
Nn3g18172 Nelumbo nucifera HOM05D002558 ORTHO05D002768 2.1e-16 89.0 87 54.0
Potri.018G043800 Populus trichocarpa HOM05D002558 ORTHO05D002768 2.1e-16 89.0 91 57.1
Peaxi162Scf01204g00123 Petunia axillaris HOM05D002558 ORTHO05D002768 2.7e-16 88.6 87 60.9
Zm00001eb345570 Zea mays HOM05D002558 ORTHO05D002768 2.7e-16 88.6 93 51.6
MBI01_g24461_MAGBIO Magnolia biondii HOM05D002558 ORTHO05D002768 3.6e-16 88.2 88 52.3
Duzib150G0654 Durio zibethinus HOM05D002558 ORTHO05D002768 6.1e-16 87.4 90 54.4
Aqoxy7G01488 Aquilegia oxysepala HOM05D002558 ORTHO05D002768 7.9e-16 87.0 91 46.2
Medtr3g110202 Medicago truncatula HOM05D002558 ORTHO05D002768 1.0e-15 86.7 96 54.2
Eucgr.C02926 Eucalyptus grandis HOM05D002558 ORTHO05D002768 1.4e-15 86.3 89 53.9
Glyma.04G083900 Glycine max HOM05D002558 ORTHO05D002768 1.4e-15 86.3 90 55.6
Lsat_1_v5_gn_5_33620 Lactuca sativa HOM05D002558 ORTHO05D002768 1.4e-15 86.3 109 62.4
vmacro05369 Vaccinium macrocarpon HOM05D002558 ORTHO05D002768 1.8e-15 85.9 91 56.0
MSTRG.25908 Avicennia marina HOM05D002558 ORTHO05D002768 2.3e-15 85.5 97 56.7
Os05g0596200 Oryza sativa ssp. japonica HOM05D002558 ORTHO05D002768 3.0e-15 85.1 91 51.6
Lalb_Chr23g0269601 Lupinus albus HOM05D002558 ORTHO05D002768 6.7e-15 84.0 91 65.9
MBI04_g27061_MAGBIO Magnolia biondii HOM05D002558 ORTHO05D002768 3.3e-14 81.6 90 52.2
Nn2g11627 Nelumbo nucifera HOM05D002558 ORTHO05D002768 3.3e-14 81.6 83 53.0
Atru.chr7.2093 Acer truncatum HOM05D002558 ORTHO05D002768 4.3e-14 81.3 93 51.6
Atru.chr7.2107 Acer truncatum HOM05D002558 ORTHO05D002768 4.3e-14 81.3 93 51.6
MD08G1114400 Malus domestica HOM05D002558 ORTHO05D002768 5.7e-14 80.9 72 58.3
THA.LOC104799194 Tarenaya hassleriana HOM05D002558 ORTHO05D002768 5.7e-14 80.9 90 54.4
CDE08G0456 Ceratophyllum demersum HOM05D002558 ORTHO05D002768 7.4e-14 80.5 89 48.3
Aa31LG3G15580 Aethionema arabicum HOM05D002558 ORTHO05D002768 9.7e-14 80.1 92 51.1
TPR.G1349 Trifolium pratense HOM05D002558 ORTHO05D002768 1.3e-13 79.7 103 52.4
MELO3C011144.2 Cucumis melo HOM05D002558 ORTHO05D002768 2.2e-13 79.0 84 52.4
HanXRQChr08g0234401 Helianthus annuus HOM05D002558 ORTHO05D002768 2.2e-13 79.0 121 51.2
Nitab4.5_0001567g0160 Nicotiana tabacum HOM05D002558 ORTHO05D002768 2.2e-13 79.0 91 53.8
Lj1g0013926 Lotus japonicus HOM05D002558 ORTHO05D002768 4.8e-13 77.8 93 52.7
COL.COLO4_20966 Corchorus olitorius HOM05D000191 ORTHO05D000122 6.3e-13 77.4 91 51.6
Sed0017645 Sechium edule HOM05D002558 ORTHO05D002768 1.1e-12 76.6 89 66.3
unitig_0.g2573 Utricularia gibba HOM05D002558 ORTHO05D002768 1.4e-12 76.3 89 59.6
VMungo0251G1540 Vigna mungo HOM05D002558 ORTHO05D002768 2.4e-12 75.5 105 45.7
Cc08_g09510 Coffea canephora HOM05D002558 ORTHO05D002768 3.1e-12 75.1 39 92.3
TAR383G0059 Trochodendron aralioides HOM05D002558 ORTHO05D002768 3.1e-12 75.1 91 49.5
CiPaw.08G025400 Carya illinoinensis HOM05D002558 ORTHO05D002768 5.3e-12 74.3 39 87.2
Sp6g32015 Schrenkiella parvula HOM05D002558 ORTHO05D002768 6.9e-12 73.9 91 49.5
PSO210G0675 Papaver somniferum HOM05D002558 ORTHO05D002768 9.1e-12 73.6 96 43.8
ATR0705G067 Amborella trichopoda HOM05D002558 ORTHO05D002768 1.2e-11 73.2 88 50.0
Lj1g0018167 Lotus japonicus HOM05D002558 ORTHO05D002768 1.2e-11 73.2 76 52.6
CSS0007775 Camellia sinensis var. sinensis HOM05D002558 ORTHO05D002768 1.5e-11 72.8 39 89.7
CAN.G309.76 Capsicum annuum HOM05D002558 ORTHO05D002768 1.5e-11 72.8 39 84.6
PSO210G3671 Papaver somniferum HOM05D002558 ORTHO05D002768 1.5e-11 72.8 96 43.8
AT5G11600 Arabidopsis thaliana HOM05D002558 ORTHO05D002768 2.0e-11 72.4 92 48.9
Ca_15596_v3 Cicer arietinum L. HOM05D002558 ORTHO05D002768 2.0e-11 72.4 40 82.5
Actinidia14672 Actinidia chinensis HOM05D002558 ORTHO05D002768 3.4e-11 71.6 39 84.6
HPP92_024168 Vanilla planifolia HOM05D002558 ORTHO05D002768 3.4e-11 71.6 91 47.3
CAN.G309.70 Capsicum annuum HOM05D000001 ORTHO05D011234 4.5e-11 71.2 88 50.0
PSO566G0111 Papaver somniferum HOM05D002558 ORTHO05D002768 7.7e-11 70.5 91 44.0
Dinv27898 Davidia involucrata HOM05D002558 ORTHO05D002768 1.0e-10 70.1 39 84.6
Psat5g021640 Pisum sativum HOM05D002558 ORTHO05D002768 1.0e-10 70.1 40 85.0
CARHR201620 Cardamine hirsuta HOM05D002558 ORTHO05D002768 1.3e-10 69.7 38 81.6
PGR044G0927 Punica granatum HOM05D002558 ORTHO05D002768 1.3e-10 69.7 40 80.0
Dinv14262 Davidia involucrata HOM05D000078 ORTHO05D002768 1.7e-10 69.3 39 82.1
AL6G22300 Arabidopsis lyrata HOM05D000191 ORTHO05D002768 2.2e-10 68.9 38 81.6
Carub.0006s1008 Capsella rubella HOM05D002558 ORTHO05D002768 2.2e-10 68.9 38 81.6
Ca_12750_v3 Cicer arietinum L. HOM05D002558 ORTHO05D002768 8.5e-10 67.0 73 53.4
A02p01100 Brassica napus HOM05D002558 ORTHO05D002768 1.1e-09 66.6 90 45.6
C02p05280 Brassica napus HOM05D002558 ORTHO05D002768 1.1e-09 66.6 91 45.1
BraA02t05090Z Brassica rapa HOM05D002558 ORTHO05D002768 1.1e-09 66.6 90 45.6
CANSAT25G1183 Cannabis sativa HOM05D002558 ORTHO05D002768 1.1e-09 66.6 40 72.5
BcaC03g13382 Brassica carinata HOM05D002558 ORTHO05D002768 1.4e-09 66.2 38 78.9
BcaNung01938 Brassica carinata HOM05D002558 ORTHO05D002768 1.4e-09 66.2 38 78.9
BolC2t06476H Brassica oleracea HOM05D002558 ORTHO05D002768 1.4e-09 66.2 38 78.9
QL12p041571 Quercus lobata HOM05D002558 ORTHO05D002768 1.4e-09 66.2 39 76.9
Medtr1g006605 Medicago truncatula HOM05D002558 ORTHO05D002768 1.9e-09 65.9 77 53.2
BcaNung01939 Brassica carinata HOM05D002558 ORTHO05D002768 4.2e-09 64.7 38 78.9
CDE02G1533 Ceratophyllum demersum HOM05D000191 ORTHO05D000122 4.2e-09 64.7 84 44.0
Thhalv10014651m.g Eutrema salsugineum HOM05D002558 ORTHO05D002768 5.5e-09 64.3 38 78.9
Sed0023683 Sechium edule HOM05D002558 ORTHO05D002768 9.4e-09 63.5 40 72.5
Mapoly0016s0021 Marchantia polymorpha HOM05D002558 ORTHO05D002768 3.6e-08 61.6 94 42.6
PSO782G1850 Papaver somniferum HOM05D002558 ORTHO05D002768 3.6e-08 61.6 39 69.2
SalBow4G2117 Salvia bowleyana HOM05D002558 ORTHO05D002768 3.6e-08 61.6 34 88.2
Manes.16G075900 Manihot esculenta HOM05D002558 ORTHO05D002768 1.0e-07 60.1 89 58.4
DCAR_000751 Daucus carota HOM05D002558 ORTHO05D002768 1.4e-07 59.7 33 81.8
Lj8A586T41 Lonicera japonica HOM05D002558 ORTHO05D002768 1.8e-07 59.3 34 79.4
TAR376G0239 Trochodendron aralioides HOM05D002558 ORTHO05D002768 1.8e-07 59.3 102 50.0
CSS0006160 Camellia sinensis var. sinensis HOM05D002558 ORTHO05D002768 3.9e-07 58.2 91 40.7
PGR083G0050 Punica granatum HOM05D002558 ORTHO05D002768 3.3e-06 55.1 104 33.7
EL10Ac2g04023 Beta vulgaris HOM05D002558 ORTHO05D002768 4.4e-06 54.7 91 44.0


User provided reference genes

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